EY659619

Overview
NameEY659619
Unique NameEY659619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:67..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.023e-16
Identity = 70/216 (32.41%), Postives = 101/216 (46.76%), Query Frame = 2
Query:  191 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGPTR 799
            G +R  W   ++   + +YL G  PGDYG+D  GLS DPE    + E       E+I+ R+AMLGA+G   PE+L K+G    E    WF+ G  I   G  +Y  +P  +          +++ LMG  E  R     N G  G               DP YPG   F+PLGLA D     + K++ +KNGRLA +  +    + ++   GP +
Sbjct:   38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQ 228          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.867e-16
Identity = 72/213 (33.80%), Postives = 103/213 (48.36%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            G DR  +    S ++ SYL G  PGDYG+D   LS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   53 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.027e-15
Identity = 74/230 (32.17%), Postives = 108/230 (46.96%), Query Frame = 2
Query:  140 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            RK +   +  S+     G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+  + G+   E    W + G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA+D +   + K++  KNGRLA +  +    + ++   GP
Sbjct:   36 RKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGVKFGEAV--WLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGP----------------LGVVVDPLYPGGS-FDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGP 240          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.342e-15
Identity = 72/214 (33.64%), Postives = 99/214 (46.26%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            G DR  W    S  + +YL G  PGDYG+D  GLS DPE    + E       EVI+ R+A+LGA+G + PE+L   AG+   E    WF+ G  I   G  +Y   P  +          +++ LMG  E  R     N G  G               DP YPG   F+PLGLA D     + K++ +KNGRLA +  +    + ++   GP
Sbjct:   41 GPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYREL------EVIHARWALLGALGILTPELLSTYAGVKFGEPV--WFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGP 229          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 71/213 (33.33%), Postives = 102/213 (47.89%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            G DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E   +WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YPGG  F+PL LA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   31 GPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEA--SWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVTDPIYPGGS-FDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 218          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 76/248 (30.65%), Postives = 114/248 (45.97%), Query Frame = 2
Query:  110 RSAQFPTGS--SRKGSFVVRAASTP--PVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            ++   P+ S  +R G   +R   T   PV  G+     DR  +    S ++ SYL G  PGDYG+D  GLS    T  F + + L   EVI+ R+ MLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + +++ +KNGRLA +  +    + ++   GP
Sbjct:   16 KAVNVPSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPAT--FAKNRKL---EVIHCRWTMLGALGCVFPELFARNGVKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVIDPLYPGGS-FDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 72/232 (31.03%), Postives = 102/232 (43.97%), Query Frame = 2
Query:  134 SSRKGSFVV-RAASTPPVKQGADRPL-WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            S++KG+  V +++S+     G D    W    Q      G  PGDYG+D  GLS DPE    + E       E+I+ R  +LGA+G + PE+L     I    A  WF+ G  I   G  NY  +P  +          +++ LMG  E  R     N G  G               DP YPG   F+PLGLA D     + K++ +KNGRLA +       + ++   GP
Sbjct:   39 STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGPAGEGL------------DPLYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGP 247          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.142e-13
Identity = 66/177 (37.29%), Postives = 87/177 (49.15%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKD 685
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   D  YPGG  F+PLGLA+D
Sbjct:   50 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLAKNGVKFGEA--VWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGP----------------LGEGLDQLYPGG-AFDPLGLAED 201          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.001e-12
Identity = 69/213 (32.39%), Postives = 100/213 (46.95%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            GADR L+    S    SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+A+   +G + PE+L + G+   E    WF+ G  I   G  ++  +P          ++  ++ LMG  E             GR         LG   DP Y GG  F+PLGL  D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   50 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPET---FAKNREL---EVIHCRWAIAVGLGCVFPELLARNGVKFGEGV--WFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG-------GR---------LGEVVDPLYLGGS-FDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 237          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.001e-12
Identity = 62/178 (34.83%), Postives = 82/178 (46.07%), Query Frame = 2
Query:  233 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLA 739
            SYL G  PGDYG+D  GLS    T  F + + L   EVI+ R AM  A+G I PE+L   G    E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+ LGLA+D +   + K++ +KNGRLA
Sbjct:   71 SYLTGEFPGDYGWDTAGLSAYPET--FAKNREL---EVIHSRCAMSAALGCIFPELLSVMGQGFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIA----------------RGPLGEVTDPLYPGS--FDSLGLAEDTEAFAELKVKELKNGRLA 223          
The following BLAST results are available for this feature:
BLAST of EY659619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2_CHLRE6.023e-1632.41Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_PETSP7.867e-1633.80Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_PETSP1.027e-1532.17Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2_CHLMO1.342e-1533.64Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SOYBN1.753e-1533.33Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PETSP2.289e-1530.65Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNSA4.317e-1431.03Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SILPR2.142e-1337.29Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB48_MAIZE9.001e-1232.39Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_MALDO9.001e-1234.83Chlorophyll a-b binding protein AB10, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659619 ID=EY659619; Name=EY659619; organism=Citrus sinensis; type=EST; length=910bp
ATTGAAGTTTAGAAACAGAGGAAAAAAGAAATTACAAATGGCAACCCAAG
CTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATT
CTTGGAGCAAGATCAGCTCAATTCCCAACTGGGTCATCAAGAAAAGGTTC
CTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACA
GACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGC
CTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGG
CACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCA
ACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATT
CTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCCA
AACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTT
ACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCACCGG
AGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTTCCT
CGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCTTACCCTGGAG
GACCTTTATTCAACCCTCTGGGTCTTGCGAAAGATGAGAAATTCATGGAA
GATTTCAAGCTCCAGGCAATGAAGAATGGAAGATTGGCATGTTGGCCATC
TTGGGTTACCTTGTTCAAGGTCTTGTTACAGGAGTTGGGCCCTACCAGAA
CCCATTGGATCACTTGGCTGATCCTTCCACAACAAGGTTTGCACTCCCCC
AATTTCACTGAGAGAGAATTTCTGTGCATTGCTTCGGATATTTATTCAAC
CTTGCATCCC
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