EY659612

Overview
NameEY659612
Unique NameEY659612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.489e-42
Identity = 96/244 (39.34%), Postives = 138/244 (56.56%), Query Frame = 3
Query:   93 SLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY----------------RLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQA----XLDAE 761
            S+ +  A+  A+ I LE D                 RCT GL  ++G SRVF+ P+ E GI+G A+G+ A G R + EIQFADY++PA DQ+++EAA+ RYRS   F    +TVR P G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++CI + +PV+F EPK LY                +    +VP+  Y +PL  A ++R  + +T++ +G  + + + A     LDAE
Sbjct:   16 SMTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDF-IVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAAADETGLDAE 258          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.658e-40
Identity = 95/244 (38.93%), Postives = 136/244 (55.74%), Query Frame = 3
Query:   93 SLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY----------------RLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSI----MEQAXLDAE 761
            ++ +  A+  A+ + LE D                 RCT GL  ++GKSRVF+ P+ E GIVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS  +F    LT+R P G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++ I   +PV+F EPK LY                +     VP+  Y +PL  A + R  +D++++ +G  + +     E++ +DAE
Sbjct:    5 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEF-IAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEESGVDAE 247          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.694e-38
Identity = 89/228 (39.04%), Postives = 128/228 (56.14%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEIS 776
            + +  AI  AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GL   G R + EIQF  +++   D +  + A+ RYRSG ++    +T+R+P+G   H    H+ S E      PG+KVVIP +P  AKGLL+S IRD +PVVF E   LYR   +EVPE++Y + L  A+V RE +D++++ +GA +    +A  + EK+ IS
Sbjct:    4 MTMIQAITDALRTELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGIGGLALGLGLNGFRPVMEIQFFGFVYEVMDSVSGQMARMRYRSGGRWT-SPVTIRSPFGGGVHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIRDNDPVVFLEHMKLYRSFRQEVPEEEYTIELGKADVKREGTDLSIITYGAMVHESLKAADELEKDGIS 230          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.691e-37
Identity = 89/229 (38.86%), Postives = 126/229 (55.02%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEISV 779
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + EIQF  +++  FD++  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S I+  +PVV+ E   LYR   +EVPE++Y + +  A V +E +DITL+ +GA +    +A  + EK+  SV
Sbjct:    4 MTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGT-KPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSV 231          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.691e-37
Identity = 89/229 (38.86%), Postives = 126/229 (55.02%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEISV 779
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + EIQF  +++  FD++  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S I+  +PVV+ E   LYR   +EVPE++Y + +  A V +E +DITL+ +GA +    +A  + EK+  SV
Sbjct:    4 MTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGT-KPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSV 231          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.691e-37
Identity = 89/229 (38.86%), Postives = 126/229 (55.02%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEISV 779
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   +EVPE++Y + +  A V +E +DI+++ +GA +    +A  + EK+  SV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSV 231          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.691e-37
Identity = 89/229 (38.86%), Postives = 126/229 (55.02%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEISV 779
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   +EVPE++Y + +  A V +E +DI+++ +GA +    +A  + EK+  SV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSV 231          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.691e-37
Identity = 89/229 (38.86%), Postives = 126/229 (55.02%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEISV 779
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   +EVPE++Y + +  A V +E +DI+++ +GA +    +A  + EK+  SV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSV 231          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.691e-37
Identity = 89/229 (38.86%), Postives = 126/229 (55.02%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEISV 779
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   +EVPE++Y + +  A V +E +DI+++ +GA +    +A  + EK+  SV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSV 231          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.691e-37
Identity = 89/229 (38.86%), Postives = 126/229 (55.02%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEISV 779
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   +EVPE++Y + +  A V +E +DI+++ +GA +    +A  + EK+  SV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSV 231          
The following BLAST results are available for this feature:
BLAST of EY659612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODBB_PSEAE8.489e-4239.342-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_PSEPU4.658e-4038.932-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODPB_BACSU5.694e-3839.04Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES3.691e-3738.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ3.691e-3738.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW3.691e-3738.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU3.691e-3738.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS3.691e-3738.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR3.691e-3738.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN3.691e-3738.86Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659612 ID=EY659612; Name=EY659612; organism=Citrus sinensis; type=EST; length=926bp
TTTGTGGGTTCCCTTTCACGGAGAATCTTTCAACTGCTTGTGCGAACAAG
CAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTGGCAAGTCTTTGAA
TTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCTTTGGAAACTGATC
CACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGGTGGAGTCTTCCGA
TGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTCGGGTATTCAATAC
CCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATTGGTCTGGCAGCTA
TGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGATTATATTTTTCCA
GCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCAGATACAGGAGTGG
AAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCCCCTTACGGAGCTG
TGGGCCATGGTGGACACTATCACTCGCAATCTCCTGAAGCTTTCTTTTGT
CACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCCCACGACAAGCAAA
AGGATTATTGCTGTCATGCATTCGTGATCCGAACCCTGTTGTCTTTTTTG
AGCCAAAGTGGCTTTACCGTTTGTCTGTAAAAGAGGTTCCTGAGGATGAT
TATATGTTGCCTTTATCAGATGCAGAGGTGATTCGAGAATGCAGTGACAT
AACACTTGTTGGCTGGGGAGCACACCTCTCTATCATGGAGCAGGCCTNGT
TAGATGCTGAAAAGGAGGAAATTTCTGTGAACTGATAGACCTGAAAACCC
TAATACCATGGGAAAGGAACAATAAAGGCCTCTGTCAAGAAACCGACGAC
TTCTTATACCCACAAACCTCGGTTCCTGAAGGTTTGAGCTGAAATTCTGA
TCTTCCTTGACGTNGGTCTTAAAAAA
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