EY659612

Overview
NameEY659612
Unique NameEY659612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.691e-37
Identity = 89/229 (38.86%), Postives = 126/229 (55.02%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEISV 779
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   +EVPE++Y + +  A V +E +DI+++ +GA +    +A  + EK+  SV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSV 231          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.820e-37
Identity = 89/229 (38.86%), Postives = 125/229 (54.59%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEISV 779
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   +EVPE++Y + +  A V +E +DI+++ +GA +    +A  + EK+  SV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRGPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSV 231          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.551e-35
Identity = 81/181 (44.75%), Postives = 109/181 (60.22%), Query Frame = 3
Query:  204 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQA 746
            T GL   FG++RV +TP+ E G +G A+  A+ G R IAE+ F D+I   FDQ++N+ AKFRY  G +     +TVR  YGA       HSQS    F  +PGLK V+P +P  AKGLLL+ I D +PV FFE K  Y +   EVPED Y +PL  A++ RE +D+TL   G  ++   +A
Sbjct:   54 TKGLVQEFGRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGTCFDQVINQGAKFRYMFGGKAQV-PITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFFFEDKTSYNMK-GEVPEDYYTIPLGKADIKREGNDVTLFAVGKQVNTALEA 232          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.835e-35
Identity = 79/209 (37.80%), Postives = 115/209 (55.02%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWG 719
            +N   A+N A+ +ALE D                 R T GL  ++G  RV++ P+ E  + G  +G A  G + I EIQF+ + FPA  QI   AA+ R RS   +    L VR P G       +HS++ EA +  + GLK V+P +P   KGL L+ I  P+PV+FFEPK LYR   +E+P D Y +P+ +A +I E S++T+V +G
Sbjct:    6 VNNIEALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAP-LVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYRAFRQEIPSDYYTVPIGEANLISEGSELTIVSYG 213          

HSP 2 Score: 24.6386 bits (52), Expect = 4.835e-35
Identity = 8/13 (61.54%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  779 ELIDLKTLIPWER 817
            ELIDL+T+ PW++
Sbjct:  234 ELIDLRTISPWDK 246          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.392e-34
Identity = 77/208 (37.02%), Postives = 115/208 (55.29%), Query Frame = 3
Query:   99 NLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWG 719
            N   A+  A+ +ALE DP                R T GL  ++G+ RV++ P+ E  + G  +G A  G + I EIQF+ + FPA  QI   AA+ R RS   + C  + VR P G       +HS++ EA +  + GLK V+P +P   KGL L+ +  P+PVVFFEPK LYR   +E+P D Y +P+  A +I + +++T+V +G
Sbjct:    8 NNIEALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCP-IIVRMPMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLYRAFRQEIPADYYTVPIGQANLISQGNNLTIVSYG 214          

HSP 2 Score: 24.6386 bits (52), Expect = 1.392e-34
Identity = 8/13 (61.54%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  779 ELIDLKTLIPWER 817
            ELIDL+T+ PW++
Sbjct:  235 ELIDLRTISPWDK 247          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.229e-32
Identity = 78/194 (40.21%), Postives = 105/194 (54.12%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEISV 779
            + T GL   FG  RV +TP+ E G  G  +G A  G R I E    ++   A DQI+N AAK  Y SG Q     +  R P GA       HSQ   A++ H+PGLKVV+P +   AKGLL + IRDPNPV+F E + LY  S +    DD++LP+  A + R   D TLV +G  ++   +A  + E + I V
Sbjct:  173 KVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAP-IVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVPKLDDFVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDV 365          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.655e-32
Identity = 74/179 (41.34%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSI 734
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VP+    +P S A++++E S++T+V +   + +
Sbjct:   38 KVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKL 214          

HSP 2 Score: 23.8682 bits (50), Expect = 4.655e-32
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  776 CELIDLKTLIPWERN 820
            CELIDL+T+ P + N
Sbjct:  229 CELIDLRTIKPLDTN 243          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.098e-32
Identity = 78/171 (45.61%), Postives = 100/171 (58.48%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLV 710
            + T  L  ++G  RV +TP+ E    G AIG A  G R I E     ++  AF+QI N A   RY SG  F    L +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPVVFFE   LY L  +E+PED+Y++PL  AEV+R+  DIT++
Sbjct:   39 KVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLP-LVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQ-EEIPEDEYLIPLDKAEVVRKGKDITIL 207          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.098e-32
Identity = 85/229 (37.12%), Postives = 119/229 (51.97%), Query Frame = 3
Query:   90 KSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG--HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKE 767
            +SL +  A+N  L  AL  DP+               R T GL   FG SRV +TPL E GIVG AIGLA  G R + EIQF  ++FP FDQI  + AK   R     +   + +R P+G  GH G   +H ++PEA+F H  GL++V P +P  A  ++   I   +PV+FFEP   Y     EV   +  LPL  + ++R  +D T+V W   + +  +A   A +E
Sbjct:   15 QSLPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITTQLAKMANRHSGAVSM-PVVIRIPHG--GHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIFFEPMSRY-WPKGEVDTLENPLPLHASRIVRSGTDATIVAWAGMVPVALRAAEIAAEE 239          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 6.098e-32
Identity = 82/190 (43.16%), Postives = 108/190 (56.84%), Query Frame = 3
Query:  204 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEI 773
            T GL  + G  R+ +TPL E   VG AIG AA G R IAE+ F D++   FDQI N+AAKFRY  G +     + +RA  GA       HSQ     F H+PGLKVV P +P   KGLL+  IRD +PV+F E K LY L   EVPE  Y +P  +A ++R+  D+++V +G  +    +A     KE I
Sbjct:   52 TKGLYAKHG-DRLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAET-PVVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCEHKNLYGLE-GEVPEGAYAIPFGEANIVRDGKDVSIVTYGLMVHRALEAAATLAKEGI 238          
The following BLAST results are available for this feature:
BLAST of EY659612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAAM3.691e-3738.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC4.820e-3738.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_BACSU1.551e-3544.75Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_MYCGE4.835e-3537.80Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN1.392e-3437.02Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RHIME1.229e-3240.21Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY4.655e-3241.34Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU6.098e-3245.61Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_LEIXX6.098e-3237.12Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH6.098e-3243.16Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659612 ID=EY659612; Name=EY659612; organism=Citrus sinensis; type=EST; length=926bp
TTTGTGGGTTCCCTTTCACGGAGAATCTTTCAACTGCTTGTGCGAACAAG
CAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTGGCAAGTCTTTGAA
TTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCTTTGGAAACTGATC
CACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGGTGGAGTCTTCCGA
TGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTCGGGTATTCAATAC
CCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATTGGTCTGGCAGCTA
TGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGATTATATTTTTCCA
GCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCAGATACAGGAGTGG
AAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCCCCTTACGGAGCTG
TGGGCCATGGTGGACACTATCACTCGCAATCTCCTGAAGCTTTCTTTTGT
CACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCCCACGACAAGCAAA
AGGATTATTGCTGTCATGCATTCGTGATCCGAACCCTGTTGTCTTTTTTG
AGCCAAAGTGGCTTTACCGTTTGTCTGTAAAAGAGGTTCCTGAGGATGAT
TATATGTTGCCTTTATCAGATGCAGAGGTGATTCGAGAATGCAGTGACAT
AACACTTGTTGGCTGGGGAGCACACCTCTCTATCATGGAGCAGGCCTNGT
TAGATGCTGAAAAGGAGGAAATTTCTGTGAACTGATAGACCTGAAAACCC
TAATACCATGGGAAAGGAACAATAAAGGCCTCTGTCAAGAAACCGACGAC
TTCTTATACCCACAAACCTCGGTTCCTGAAGGTTTGAGCTGAAATTCTGA
TCTTCCTTGACGTNGGTCTTAAAAAA
back to top