EY659612

Overview
NameEY659612
Unique NameEY659612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.964e-32
Identity = 81/187 (43.32%), Postives = 105/187 (56.15%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDA 758
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + HVPGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VPE    +P   A+++RE S +T+V +    SI  +  LDA
Sbjct:   38 KVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQAKC-PIVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPETIEPIPFGQAKILREGSSVTIVTF----SIQVKLALDA 218          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.339e-31
Identity = 74/179 (41.34%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSI 734
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VP+    +P S A++++E S++T+V +   + +
Sbjct:   38 KVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKL 214          

HSP 2 Score: 22.3274 bits (46), Expect = 1.339e-31
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  776 CELIDLKTLIPWERNN 823
            CELIDL+T+ P + ++
Sbjct:  229 CELIDLRTIKPLDTDS 244          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.774e-31
Identity = 80/187 (42.78%), Postives = 105/187 (56.15%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDA 758
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPVVF E + LY  S  +VP+    +P   A+++RE S +T+V +    SI  +  LDA
Sbjct:   38 KVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLENEILYGHSF-DVPKTIEPIPFGQAKILREGSSVTIVTF----SIQVKLALDA 218          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.952e-31
Identity = 75/204 (36.76%), Postives = 111/204 (54.41%), Query Frame = 3
Query:  102 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLV 710
            LY A+N+ +H  +E DP+ +             + T GL +++G  R+ +TP+ E    G AIG A  G R I E     ++  AF+QI N A    Y SG  F    L VR P G     G  HSQ  E++F  VPGL++V   +P  AKGL+ S IR  NP++FFE   LY +  + +P+ +Y++PL  AE++R  + IT++
Sbjct:    6 LYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTTP-LVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIK-ENIPQKEYLVPLEKAELVRSGNQITIL 207          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 5.162e-31
Identity = 88/269 (32.71%), Postives = 135/269 (50.19%), Query Frame = 3
Query:   90 KSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---KEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEIS---VN**T*KP*YHGKGTIKASVKKPTTSYTHKPRF 875
            K + +  A+N A+   +  DP+ +             + T GL +++G  RV++TP+ E G  G  +G A  G + + E    ++   A D I+N AAK  Y S  Q N   +  R P GA    G  HSQ   A++  VPGLKV+ P S   A+GLL + IRDP+PVVF E + LY  S    +E  +  + LP+  A++ RE  D+T+V +   +    +A     +E IS   +N  + +P    + TI ASV+K +   T +  F
Sbjct:   34 KEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVP-IVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRP--LDRATINASVRKTSRLVTVEEGF 299          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.150e-30
Identity = 77/186 (41.40%), Postives = 104/186 (55.91%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLD 755
            + T  L  ++G  RV +TP+ E   +G AIG A  G R I E     ++  AF+QI N A   RY SG  F    + +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPV+FFE   LY L   E+P D+Y LPL  AE++R+  D+T++ +      + QA +D
Sbjct:   39 KVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFQIP-IVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYNLK-DELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVD 222          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 75/171 (43.86%), Postives = 98/171 (57.31%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLV 710
            + T  L  ++G  RV +TP+ E    G AIG A  G R I E     ++  AF+QI N A   RY SG  F    L +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPVVFFE   LY L  +E+P+++Y LPL+  E +R+  DIT++
Sbjct:   39 KVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLP-LVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQ-EEIPQEEYFLPLNKVEFVRKGKDITIL 207          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.833e-29
Identity = 79/218 (36.24%), Postives = 115/218 (52.75%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQA 746
            L +Y A+ +A+   +  D R +             + T  L  ++G  RV +TP+ E    G AIG A  G + + E     ++  AF+QI N A    Y SG  ++   L +R P G        HSQ  EA+F  VPGLK+V   +P  AKGLL + IRD NPV+F E   LY L  +E+P+ +Y+LPL  A+V+RE SD+T++ +   L  + QA
Sbjct:    5 LFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGMNLSFLLLAFNQISNNAGMLHYTSGGNWSIP-LVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYNLK-QEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQA 220          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.406e-28
Identity = 74/187 (39.57%), Postives = 103/187 (55.08%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDA 758
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   A D IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + ++PGLKVV P S    KGL+++ IRD NPV+F E + LY  S  ++ E+   +P   A+V++E   +T+V +    SI  +  LDA
Sbjct:   38 KVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHYMSGGQVRC-PIVFRGPNGAASRVAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITAIRDDNPVIFLENEILYGHSF-DISENVEPIPFGKAKVLKEGDSVTIVTF----SIQVKLALDA 218          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.406e-28
Identity = 84/234 (35.90%), Postives = 120/234 (51.28%), Query Frame = 3
Query:   90 KSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQ-FNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWL--YRLSVKEVPED-DYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEIS 776
            K + +  AIN AL   L  D + +             + T GL D++G  R+ +TP+ E G  G  +G A  G R I E    ++   A D I+N +AK  Y SG + FN   +  R P G     G  HSQ   A++  VPGLKVV P S    +GLL S IRD NPVV+ E + L  Y+  + +  +D +Y++P+  A+V RE  D+T+VG+   +S   +A     KE IS
Sbjct:   27 KEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFN--PIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGIS 258          
The following BLAST results are available for this feature:
BLAST of EY659612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_RICFE7.964e-3243.32Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR1.339e-3141.34Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN1.774e-3142.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU3.952e-3136.76Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ARATH5.162e-3132.71Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_GRATL1.150e-3041.40Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE3.346e-3043.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME2.833e-2936.24Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICBR1.406e-2839.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_DICDI1.406e-2835.90Pyruvate dehydrogenase E1 component subunit beta, ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659612 ID=EY659612; Name=EY659612; organism=Citrus sinensis; type=EST; length=926bp
TTTGTGGGTTCCCTTTCACGGAGAATCTTTCAACTGCTTGTGCGAACAAG
CAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTGGCAAGTCTTTGAA
TTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCTTTGGAAACTGATC
CACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGGTGGAGTCTTCCGA
TGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTCGGGTATTCAATAC
CCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATTGGTCTGGCAGCTA
TGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGATTATATTTTTCCA
GCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCAGATACAGGAGTGG
AAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCCCCTTACGGAGCTG
TGGGCCATGGTGGACACTATCACTCGCAATCTCCTGAAGCTTTCTTTTGT
CACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCCCACGACAAGCAAA
AGGATTATTGCTGTCATGCATTCGTGATCCGAACCCTGTTGTCTTTTTTG
AGCCAAAGTGGCTTTACCGTTTGTCTGTAAAAGAGGTTCCTGAGGATGAT
TATATGTTGCCTTTATCAGATGCAGAGGTGATTCGAGAATGCAGTGACAT
AACACTTGTTGGCTGGGGAGCACACCTCTCTATCATGGAGCAGGCCTNGT
TAGATGCTGAAAAGGAGGAAATTTCTGTGAACTGATAGACCTGAAAACCC
TAATACCATGGGAAAGGAACAATAAAGGCCTCTGTCAAGAAACCGACGAC
TTCTTATACCCACAAACCTCGGTTCCTGAAGGTTTGAGCTGAAATTCTGA
TCTTCCTTGACGTNGGTCTTAAAAAA
back to top