EY659612

Overview
NameEY659612
Unique NameEY659612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 73/204 (35.78%), Postives = 108/204 (52.94%), Query Frame = 3
Query:  102 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLV 710
            L+ A+ Q L   ++ DPR               + T G A+R+G  R+ +TP+ E    G AIG A  G R + E     ++  AF+QI N A    Y SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P  AKGL+ S IR  NP++ FE   LY L  +++ E++Y++ L  AEV+R  +DIT++
Sbjct:    6 LFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTIP-IVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLK-EDLAEEEYLVCLEKAEVVRPGNDITIL 207          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 82/236 (34.75%), Postives = 123/236 (52.12%), Query Frame = 3
Query:   84 SGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---KEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSI-MEQAXLDAEKEEIS 776
            S K++ +  A+N A+   L+ D   +             + + GL DRFG+ RV +TP+ E G  G A+G A  G + I E    ++   A D +VN AAK  Y SG    C  +  R P GA    G  HSQ    ++  +PGLKV++P S   A+GLL + IRDPNPVVF E + LY  S    +E    ++ LP   A++ RE +DI++V +  ++   +E A +  +K  +S
Sbjct:   35 STKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKC-QMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLPYK-AKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVS 268          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 85/271 (31.37%), Postives = 131/271 (48.34%), Query Frame = 3
Query:   84 SGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---KEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEIS---VN**T*KP*YHGKGTIKASVKKPTTSYTHKPRF 875
            S K + +  A+N AL + +  D + +             + T GL +++G  RV +TP+ E G  G  +G A  G + + E    ++   A D I+N AAK  Y S  Q +   +  R   G     G  HS    +++   PGLKV++P S   A+GLL + IRDP+PVVF E + LY  S     EV +  + LP+  A++ RE  D+T+  +   +    +A    EKE IS   +N  + +P    + TI ASV+K     T +  F
Sbjct:   22 SAKQMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISV-PIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRP--LDRPTINASVRKTNRLVTVEEGF 289          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 82/246 (33.33%), Postives = 119/246 (48.37%), Query Frame = 3
Query:   39 CANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---KEVPEDDYMLPLSDAEVIRECSDITLVGW--GAHLSIMEQAXLDA 758
            C N  + +       +  ++ +  A+NQA+   ++ D R +             + + GL  + G  RV +TP+ E G  G A+G A  G R I E    ++   A DQI+N AAK  Y S  +     +  R P GA       HSQ   A++ H PGLKVV P S   AKGLL + IRD NPVVF E + LY  S     EV  DD+++P+  A++ R    +T+V +  G   S+     L+A
Sbjct:    6 CGNLFVARLAGTSTRAASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVP-IVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEA 250          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 2.030e-27
Identity = 72/192 (37.50%), Postives = 98/192 (51.04%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEI 773
            + T GL   FG  RV +TP+ E G  G  +G A  G R + E    ++   A D I+N AAK  Y SG Q  C  +  R P GA    G  H+Q+   ++  VPGL V+ P     AKGLL + IR  +PVVF E + LY  +      DD++LP+  A +IRE  D+T+V +   +S    A     KE I
Sbjct:  174 KVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRCP-IVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKMDDFVLPIGKARIIREGKDVTIVSYSIGVSFALTAAEALAKEGI 364          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.651e-27
Identity = 78/212 (36.79%), Postives = 106/212 (50.00%), Query Frame = 3
Query:   90 KSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---KEVPEDDYMLPLSDAEVIRECSDITLVG 713
            K + +  A+N A+   ++ D R +             + + GL D+FG  RV +TP+ E G  G A G A  G R I E    ++   A D IVN AA+  Y SG    C  +  R P G        HSQ    ++  +PGLKVV P S   A+GLL + IRDPNPVV  E + LY  +    KE   +D++LP   A+V R   DIT+VG
Sbjct:   36 KEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQAC-PIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVG 246          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.651e-27
Identity = 77/204 (37.75%), Postives = 108/204 (52.94%), Query Frame = 3
Query:  102 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLV 710
            L+ A+ +A+   +E + R               + T GL  ++GK RV +TP+ E   VG A+G AA G   + E     +I  A+ QI N        SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P  AKGLL S IR  NP++F E   LY L   EVP++DY+LPL  AE++RE SDIT++
Sbjct:    6 LFEALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQISNNMGMLCATSGGHFQVP-MVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLYNLK-GEVPDNDYLLPLEKAELVREGSDITVL 207          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.906e-27
Identity = 70/204 (34.31%), Postives = 108/204 (52.94%), Query Frame = 3
Query:  102 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLV 710
            L+ A+ + L   ++ DP+               + T G A+++G  R+ +TP+ E    G AIG A  G R + E     ++  AF+QI N A    Y SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P  AKGL+ S IR  NPV+ FE   LY L  + +P+++Y++ L  AE++R  +DIT++
Sbjct:    6 LFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGANFTIP-IVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFEHVLLYNLK-ETIPDNEYLVCLEKAEIVRPGTDITIL 207          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.007e-26
Identity = 74/204 (36.27%), Postives = 106/204 (51.96%), Query Frame = 3
Query:  102 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLV 710
            L+ A+  AL   ++ DP                + T G  +++G  R+ +TP+ E    G AIG A  G R I E     ++  AF+QI N A    Y SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P   KGLL S IR+ NPV+FFE   LY L+ + + E +Y+L L  AEV+R  +DIT++
Sbjct:    6 LFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFKIP-IVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLYNLN-ENLIEQEYLLCLEKAEVVRPGNDITIL 207          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.244e-26
Identity = 80/251 (31.87%), Postives = 123/251 (49.00%), Query Frame = 3
Query:   27 LSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPE---DDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKE 767
            L++ACA +Q +++   G     ++ +  A+N AL   ++ D R +             + + GL  ++G  R+++TP+ E  I G ++G A  G R I E    ++     D I+N AAK  Y S  +F+   +  R   GA       HSQ   A+F H PG+KVV+P     A+GLL + +RD NPV+  E + LY +     PE    D++LP   A++ R   DIT+V     LSI     L A  E
Sbjct:   14 LTSACALEQSVRRLASGT---LNVTVRDALNAALDEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNGLRPICEFMSMNFSMQGIDHIINSAAKAHYMSAGRFHVP-IVFRGANGAAVGVAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAAVRDDNPVICLENEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIVS----LSIGVDVSLHAADE 256          
The following BLAST results are available for this feature:
BLAST of EY659612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_ZYGCR4.090e-2835.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_YEAST4.090e-2834.75Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA4.090e-2831.37Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL4.090e-2833.33Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO2.030e-2737.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_SCHPO2.651e-2736.79Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CHLAT2.651e-2737.75Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAPU5.906e-2734.31Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL1.007e-2636.27Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU2.244e-2631.87Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659612 ID=EY659612; Name=EY659612; organism=Citrus sinensis; type=EST; length=926bp
TTTGTGGGTTCCCTTTCACGGAGAATCTTTCAACTGCTTGTGCGAACAAG
CAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTGGCAAGTCTTTGAA
TTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCTTTGGAAACTGATC
CACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGGTGGAGTCTTCCGA
TGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTCGGGTATTCAATAC
CCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATTGGTCTGGCAGCTA
TGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGATTATATTTTTCCA
GCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCAGATACAGGAGTGG
AAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCCCCTTACGGAGCTG
TGGGCCATGGTGGACACTATCACTCGCAATCTCCTGAAGCTTTCTTTTGT
CACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCCCACGACAAGCAAA
AGGATTATTGCTGTCATGCATTCGTGATCCGAACCCTGTTGTCTTTTTTG
AGCCAAAGTGGCTTTACCGTTTGTCTGTAAAAGAGGTTCCTGAGGATGAT
TATATGTTGCCTTTATCAGATGCAGAGGTGATTCGAGAATGCAGTGACAT
AACACTTGTTGGCTGGGGAGCACACCTCTCTATCATGGAGCAGGCCTNGT
TAGATGCTGAAAAGGAGGAAATTTCTGTGAACTGATAGACCTGAAAACCC
TAATACCATGGGAAAGGAACAATAAAGGCCTCTGTCAAGAAACCGACGAC
TTCTTATACCCACAAACCTCGGTTCCTGAAGGTTTGAGCTGAAATTCTGA
TCTTCCTTGACGTNGGTCTTAAAAAA
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