EY659612

Overview
NameEY659612
Unique NameEY659612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.000e-26
Identity = 84/251 (33.47%), Postives = 123/251 (49.00%), Query Frame = 3
Query:  111 AINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPE---DDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEIS---VN**T*KP*YHGKGTIKASVKK 842
            AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y SG       +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y +  +  PE    D+++P+  A++ R+ + IT+V     +    +A     KE +    +N  T +P      TI+ASV K
Sbjct:   38 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRP--MDMETIEASVMK 285          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 5.000e-26
Identity = 84/251 (33.47%), Postives = 123/251 (49.00%), Query Frame = 3
Query:  111 AINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPE---DDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEIS---VN**T*KP*YHGKGTIKASVKK 842
            AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y SG       +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y +  +  PE    D+++P+  A++ R+ + IT+V     +    +A     KE +    +N  T +P      TI+ASV K
Sbjct:   38 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRP--MDMETIEASVMK 285          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.530e-26
Identity = 74/204 (36.27%), Postives = 104/204 (50.98%), Query Frame = 3
Query:  102 LYSAINQALHIAL-ETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLV 710
            L+ A+N A+   +   D  A             + T  L  ++G+ RV +TP+ E   VG AIG A  G   + E     +I  AF QI N        SG  ++   + +R P G     G  HSQ  E +F  VPGL++V   +P  AKGLL S IR  NP+ F E   LY L   EVP++DY+LPL  AE++R+ +DIT++
Sbjct:    6 LFEALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQISNNMGMLSATSGGHYHIP-IVLRGPGGVGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLEHVLLYNLKA-EVPDNDYVLPLEKAEIVRQGNDITIL 207          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.530e-26
Identity = 75/225 (33.33%), Postives = 110/225 (48.89%), Query Frame = 3
Query:  111 AINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVK---EVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEI 773
            AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y SG       +  R P GA       HSQ   A++ H PGLKVV P S   AKGL+ S IRD NPVV  E + +Y +  +   E    D+++P+  A++ R+ + +T+V     +    +A     KE I
Sbjct:   38 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGI 261          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.900e-25
Identity = 75/230 (32.61%), Postives = 112/230 (48.70%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVK---EVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEI 773
            L +  AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y S        +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y ++ +   E    D+++P+  A++ R+ + IT+V     +    +A     KE I
Sbjct:   33 LTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGI 261          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.481e-25
Identity = 75/230 (32.61%), Postives = 112/230 (48.70%), Query Frame = 3
Query:   96 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVK---EVPEDDYMLPLSDAEVIRECSDITLVGWGAHLSIMEQAXLDAEKEEI 773
            L +  AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y S        +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y ++ +   E    D+++P+  A++ R+ + IT+V     +    +A     KE I
Sbjct:   33 LTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGI 261          
BLAST of EY659612 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.962e-23
Identity = 70/196 (35.71%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  198 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVKEVPEDDYMLPLSDAEVIRECSDITLVGWGAH----LSIMEQAXLDAEKEEI 773
            + T  L  ++G  RV + P+ E    G AIG A  G R I E     ++  AF+QI N  +  +Y SG  FN   + +R P G        HSQ  E+ F  +PGL++V   +   AKGLL S I +  P++F E   LY L    VP+++Y LPL  AEV+R  SD+T+V +       L+ +E+  L+ +  EI
Sbjct:   39 KVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQISNNLSMLQYTSGGNFNI-PVVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSAIIEKKPILFLEHVLLYNLK-GFVPDEEYYLPLDKAEVVRSGSDVTIVTYSRMRYHVLAAVEKLVLNGQDPEI 232          
The following BLAST results are available for this feature:
BLAST of EY659612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_PONAB5.000e-2633.47Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN5.000e-2633.47Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MESVI6.530e-2636.27Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BOVIN6.530e-2633.33Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT1.900e-2532.61Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE2.481e-2532.61Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CYACA3.962e-2335.71Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659612 ID=EY659612; Name=EY659612; organism=Citrus sinensis; type=EST; length=926bp
TTTGTGGGTTCCCTTTCACGGAGAATCTTTCAACTGCTTGTGCGAACAAG
CAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTGGCAAGTCTTTGAA
TTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCTTTGGAAACTGATC
CACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGGTGGAGTCTTCCGA
TGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTCGGGTATTCAATAC
CCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATTGGTCTGGCAGCTA
TGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGATTATATTTTTCCA
GCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCAGATACAGGAGTGG
AAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCCCCTTACGGAGCTG
TGGGCCATGGTGGACACTATCACTCGCAATCTCCTGAAGCTTTCTTTTGT
CACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCCCACGACAAGCAAA
AGGATTATTGCTGTCATGCATTCGTGATCCGAACCCTGTTGTCTTTTTTG
AGCCAAAGTGGCTTTACCGTTTGTCTGTAAAAGAGGTTCCTGAGGATGAT
TATATGTTGCCTTTATCAGATGCAGAGGTGATTCGAGAATGCAGTGACAT
AACACTTGTTGGCTGGGGAGCACACCTCTCTATCATGGAGCAGGCCTNGT
TAGATGCTGAAAAGGAGGAAATTTCTGTGAACTGATAGACCTGAAAACCC
TAATACCATGGGAAAGGAACAATAAAGGCCTCTGTCAAGAAACCGACGAC
TTCTTATACCCACAAACCTCGGTTCCTGAAGGTTTGAGCTGAAATTCTGA
TCTTCCTTGACGTNGGTCTTAAAAAA
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