EY659604

Overview
NameEY659604
Unique NameEY659604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659604_ssr247 microsatellite EY659604_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_PONAB (Actin-related protein 3 OS=Pongo abelii GN=ACTR3 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 2.979e-38
Identity = 81/142 (57.04%), Postives = 98/142 (69.01%), Query Frame = 1 
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES        +K    AQ     GV  DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PEDHYFLLTE PL  PE+REYT EIMFE+F
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES--------AKVGDQAQRRVMKGV-DDLDFFIGDEAIEKP----TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESF 134

HSP 2 Score: 26.1794 bits (56), Expect = 2.979e-38
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3 
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  134 FNVPGLYIAVQAVLAL 149
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_MOUSE (Actin-related protein 3 OS=Mus musculus GN=Actr3 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 2.979e-38
Identity = 81/142 (57.04%), Postives = 98/142 (69.01%), Query Frame = 1 
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES        +K    AQ     GV  DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PEDHYFLLTE PL  PE+REYT EIMFE+F
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES--------AKVGDQAQRRVMKGV-DDLDFFIGDEAIEKP----TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESF 134

HSP 2 Score: 26.1794 bits (56), Expect = 2.979e-38
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3 
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  134 FNVPGLYIAVQAVLAL 149
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_HUMAN (Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 2.979e-38
Identity = 81/142 (57.04%), Postives = 98/142 (69.01%), Query Frame = 1 
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES        +K    AQ     GV  DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PEDHYFLLTE PL  PE+REYT EIMFE+F
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES--------AKVGDQAQRRVMKGV-DDLDFFIGDEAIEKP----TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESF 134

HSP 2 Score: 26.1794 bits (56), Expect = 2.979e-38
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3 
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  134 FNVPGLYIAVQAVLAL 149
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_BOVIN (Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 2.979e-38
Identity = 81/142 (57.04%), Postives = 98/142 (69.01%), Query Frame = 1 
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES        +K    AQ     GV  DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PEDHYFLLTE PL  PE+REYT EIMFE+F
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES--------AKVGDQAQRRVMKGV-DDLDFFIGDEAIEKP----TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESF 134

HSP 2 Score: 26.1794 bits (56), Expect = 2.979e-38
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3 
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  134 FNVPGLYIAVQAVLAL 149
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_CHICK (Actin-related protein 3 OS=Gallus gallus GN=ACTR3 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.882e-38
Identity = 79/143 (55.24%), Postives = 97/143 (67.83%), Query Frame = 1 
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMA---DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES          A  + Q    V+    DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PEDHYFLLTE PL  PE+REYT EIMFE+F
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES----------AKVVDQAQRRVLKGVDDLDFFIGDEAIEKP----TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESF 134

HSP 2 Score: 26.1794 bits (56), Expect = 3.882e-38
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3 
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  134 FNVPGLYIAVQAVLAL 149
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_TAKRU (Actin-related protein 3 OS=Takifugu rubripes GN=actr3 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.582e-38
Identity = 81/142 (57.04%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES        SK    AQ     GV  DLDFFIGDEA+ K      Y   +PIRHG V++WD MER+ +Q IF YLR +PEDHYFLLTE PL  PE+REYT EIMFE+F
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIMPSCIAIKES--------SKVGDQAQRRMMRGV-DDLDFFIGDEAIDKP----PYATKWPIRHGIVEDWDLMERFMEQIIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESF 134

HSP 2 Score: 26.1794 bits (56), Expect = 8.582e-38
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3 
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  134 FNVPGLYIAVQAVLAL 149
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3B_MOUSE (Actin-related protein 3B OS=Mus musculus GN=Actr3b PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.273e-37
Identity = 76/145 (52.41%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:  298 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMA---DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            S P  V+D GTGYTK+G+AGN EP FI+P+ +A+ ES          A  + Q    V+    DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q +F YLR +PEDHYFL+TE PL  PE+REY  EIMFE+F
Sbjct:    4 SLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRES----------AKVVDQAQRRVLRGVDDLDFFIGDEAIDKP----TYATKWPIRHGIVEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESF 134

HSP 2 Score: 26.1794 bits (56), Expect = 9.273e-37
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3 
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  134 FNVPGLYIAVQAVLAL 149
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3B_HUMAN (Actin-related protein 3B OS=Homo sapiens GN=ACTR3B PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.208e-36
Identity = 75/145 (51.72%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:  298 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMA---DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            S P  V+D GTGYTK+G+AGN EP FI+P+ +A+ ES          A  + Q    V+    DLDFFIGDEA+ K     TY   +PIRHG +++WD MER+ +Q +F YLR +PEDHYFL+TE PL  PE+REY  EIMFE+F
Sbjct:    4 SLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRES----------AKVVDQAQRRVLRGVDDLDFFIGDEAIDKP----TYATKWPIRHGIIEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESF 134

HSP 2 Score: 26.1794 bits (56), Expect = 1.208e-36
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3 
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  134 FNVPGLYIAVQAVLAL 149
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_NEUCR (Actin-related protein 3 OS=Neurospora crassa GN=arp-3 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 4.583e-35
Identity = 77/155 (49.68%), Postives = 93/155 (60.00%), Query Frame = 1 
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSK----ANWLAQYNAGV-----------MADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PAVV+DNGTG++K+GFAGN  P F+ PT +A          S S     AN  +    G              DLD+FIGDEAV  +     Y L YPIRHGQ++NWD MER+W   IF YLR +PEDH+FLLTE PL  PE+RE T EI FE+F
Sbjct:    6 PAVVMDNGTGFSKLGFAGNDSPSFVFPTAIATKSPSAGTGGSGSGRPAVANKPSFLTGGAGPGGHLSAKRGTEDLDYFIGDEAVAAANGPG-YGLHYPIRHGQIENWDHMERFWSNSIFKYLRVEPEDHHFLLTEPPLNPPENRENTAEIFFESF 159
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_YEAST (Actin-related protein 3 OS=Saccharomyces cerevisiae GN=ARP3 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.817e-35
Identity = 82/173 (47.40%), Postives = 105/173 (60.69%), Query Frame = 1 
Query:  286 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAV-------------------NE-SFLNQSRSSSKANW-----LAQYNAGVMA--DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            M   + PAVV+DNGTG TK+GFAGN  P ++ PT +A                    NE S+   S S++  N      L+   +G     DLDF+IG+EA+  S+  S Y+LSYPIRHGQV+NWD MER+W+  IF YLR +PEDH+FLLTE PL  PE+RE   EI FE+F
Sbjct:    1 MSYLNNPAVVMDNGTGLTKLGFAGNDSPSWVFPTAIATAAPSNTKKSSGVGAPSAVSNEASYFGNSTSATNFNGATGGLLSNNLSGKRGTEDLDFYIGNEALVASQGPS-YSLSYPIRHGQVENWDHMERFWENSIFKYLRTEPEDHFFLLTEPPLNPPENREQVAEIFFESF 172
The following BLAST results are available for this feature:
BLAST of EY659604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
ARP3_PONAB2.979e-3857.04Actin-related protein 3 OS=Pongo abelii GN=ACTR3 P... [more]
ARP3_MOUSE2.979e-3857.04Actin-related protein 3 OS=Mus musculus GN=Actr3 P... [more]
ARP3_HUMAN2.979e-3857.04Actin-related protein 3 OS=Homo sapiens GN=ACTR3 P... [more]
ARP3_BOVIN2.979e-3857.04Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=... [more]
ARP3_CHICK3.882e-3855.24Actin-related protein 3 OS=Gallus gallus GN=ACTR3 ... [more]
ARP3_TAKRU8.582e-3857.04Actin-related protein 3 OS=Takifugu rubripes GN=ac... [more]
ARP3B_MOUSE9.273e-3752.41Actin-related protein 3B OS=Mus musculus GN=Actr3b... [more]
ARP3B_HUMAN1.208e-3651.72Actin-related protein 3B OS=Homo sapiens GN=ACTR3B... [more]
ARP3_NEUCR4.583e-3549.68Actin-related protein 3 OS=Neurospora crassa GN=ar... [more]
ARP3_YEAST7.817e-3547.40Actin-related protein 3 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659604 ID=EY659604; Name=EY659604; organism=Citrus sinensis; type=EST; length=935bp
CCACGCGTCCGGACAGTGATAGCAATGATGAAGAAGTTGATGAGCGAGGC
TTATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGT
ACCAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATT
CAAGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTC
CATTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCA
CCACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCT
CGTCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTT
TGCGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAA
ACGAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTT
GCACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGA
TGAAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATC
CTATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGG
CAGCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGGATCACTACTT
TCTGTTGACCGAGAGCCCGCTCACTGCTCCTGAGAGTAGAGAGTATACTG
GTGAGATCATGTTTGAGACTTTTATGTTCCTGGNNCTTATATTGCTGTGA
ATTCNGTGCTTGCACTGCAGCTGGGTACACACATCTAAATGTGAGAGACA
NGAGTTGTGTGGATGTTNGAATGGGGCTACTATGTAGTACAGTCCCAGAG
GGCTTGTCATGGGAGCACATTAGTCGATTCTATTGCTGAAAGATGCACTT
TTTCATCCCAGCTCTGCGGGAAAAGGGAAATATTC
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