EY659604

Overview
NameEY659604
Unique NameEY659604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659604_ssr247 microsatellite EY659604_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACTT1_MACFA (Actin-related protein T1 OS=Macaca fascicularis GN=ACTRT1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.071e-11
Identity = 46/140 (32.86%), Postives = 65/140 (46.43%), Query Frame = 1
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PAV+ DNG+G  K G +G + P  ++ +V+   +  +  +R       L QY          F+G EA+ K       +L YPI+ G V  WD ME+ W+      L   P     L+TE  L   E RE   E+MFE F
Sbjct:   10 PAVIFDNGSGLCKAGVSGEIGPRHVINSVLGHRKFNMPSAR-------LNQY----------FVGQEALYKF---DALHLHYPIKRGLVTGWDDMEKLWKHLFEWELGVKPSQQPVLMTEPSLNPREIREKLAEMMFENF 129          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP2_SCHPO (Actin-related protein 2 OS=Schizosaccharomyces pombe GN=arp2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.705e-11
Identity = 42/140 (30.00%), Postives = 66/140 (47.14%), Query Frame = 1
Query:  310 VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFMF 729
            +V+DNGTG+ K+G+A +  P F  P++V              +    A+   G +   D  +GDEA       S   + YP+ +G + +++ M + W    F  L+ DP     LLTE P+    +RE   E MFE + F
Sbjct:    6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVG-------------RPILRAEEKTGNVQIKDVMVGDEA---EAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGF 129          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACTZ_NEUCR (Actin-like protein OS=Neurospora crassa GN=ro-4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.705e-11
Identity = 46/145 (31.72%), Postives = 70/145 (48.28%), Query Frame = 1
Query:  289 DPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            D      +V+DNG+G  + GFAG+  P    P       SF+ + +         +  AG +   + FIG +A ++ R      + YP+ HG V +WD ME+ W       L+   E+H  LLTE PL    +R+   +I+FETF
Sbjct:    3 DSLHNAPIVLDNGSGTIRAGFAGDDVPKCHFP-------SFVGRPKH-------LRVLAGALEG-EVFIGQKAASELRG--LLKIRYPLEHGIVTDWDDMEKIWAYVYDEGLKTLSEEHPVLLTEPPLNPRANRDTAAQILFETF 130          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT26_DICDI (Putative actin-26 OS=Dictyostelium discoideum GN=act26 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.705e-11
Identity = 44/139 (31.65%), Postives = 65/139 (46.76%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            ++VID G+G  K G  G   P    P++V             +K               ++++GDEA ++    S   L YPI++G V NW+ ME+      +N LR  P+ +  L TESPL    +RE   +IMFE F
Sbjct:    7 SIVIDCGSGMCKAGIGGEEFPRVSFPSIVGKPRFEKTMCAIGNK---------------EYYVGDEAQSQRGMLS---LKYPIKNGIVVNWEYMEKLLFHMFYNELRVSPDQYPILFTESPLNPKSNREMLTQIMFEKF 127          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP2_DICDI (Actin-related protein 2 OS=Dictyostelium discoideum GN=arpB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.615e-11
Identity = 48/145 (33.10%), Postives = 70/145 (48.28%), Query Frame = 1
Query:  298 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLR-CDPEDHYFLLTESPLTAPESREYTGEIMFETFMF 729
            S   +V+DNGTG+ K GFAG   P  I P++  V    L   RS  K       N  +    D  +GDEA   ++  S   ++YP+ +G + NWD +   W   +   L+  DP +   LLTE P+    +R+   E MFE + F
Sbjct:    3 SNKVIVMDNGTGFVKCGFAGANFPTAIFPSM--VGRPIL---RSEEKVE-----NVEIK---DIMVGDEA---AKLRSMLQITYPLENGIIRNWDDITHVWDYALKEKLKVSDPTECKILLTEPPMNPVANRQKMIECMFEKYGF 131          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_PROCL (Actin (Fragment) OS=Procambarus clarkii PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.615e-11
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1
Query:  493 IGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            +GDEA +K        L YPI HG + NWD ME+ W    +N LR  PE+   +LTE+PL    +RE   +IMFE F
Sbjct:    1 VGDEAQSKR---GILTLKYPIEHGIITNWDDMEKIWYHTFYNELRIAPEESPTMLTEAPLNPKANREKMTQIMFEAF 74          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACL7B_RAT (Actin-like protein 7B OS=Rattus norvegicus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 42/139 (30.22%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VID G+ Y K G+AG   P + + + V          RS+  A      +AG     + ++G E +    S    N   P++HG V +WD ++  W+      ++  PE+H  L+++ PL+   +RE   E+MFETF
Sbjct:   52 ALVIDLGSQYCKCGYAGEPRPTYFISSTVG--------KRSAEMAA-----DAGDTFK-ETYVGHELLNMEASLKLVN---PLKHGVVVDWDCIQNIWEYIFHTAMKILPEEHAVLVSDPPLSPTSNREKYAELMFETF 173          
The following BLAST results are available for this feature:
BLAST of EY659604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
ACTT1_MACFA2.071e-1132.86Actin-related protein T1 OS=Macaca fascicularis GN... [more]
ARP2_SCHPO2.705e-1130.00Actin-related protein 2 OS=Schizosaccharomyces pom... [more]
ACTZ_NEUCR2.705e-1131.72Actin-like protein OS=Neurospora crassa GN=ro-4 PE... [more]
ACT26_DICDI2.705e-1131.65Putative actin-26 OS=Dictyostelium discoideum GN=a... [more]
ARP2_DICDI4.615e-1133.10Actin-related protein 2 OS=Dictyostelium discoideu... [more]
ACT_PROCL4.615e-1144.16Actin (Fragment) OS=Procambarus clarkii PE=1 SV=1[more]
ACL7B_RAT7.871e-1130.22Actin-like protein 7B OS=Rattus norvegicus GN=Actl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659604 ID=EY659604; Name=EY659604; organism=Citrus sinensis; type=EST; length=935bp
CCACGCGTCCGGACAGTGATAGCAATGATGAAGAAGTTGATGAGCGAGGC
TTATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGT
ACCAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATT
CAAGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTC
CATTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCA
CCACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCT
CGTCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTT
TGCGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAA
ACGAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTT
GCACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGA
TGAAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATC
CTATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGG
CAGCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGGATCACTACTT
TCTGTTGACCGAGAGCCCGCTCACTGCTCCTGAGAGTAGAGAGTATACTG
GTGAGATCATGTTTGAGACTTTTATGTTCCTGGNNCTTATATTGCTGTGA
ATTCNGTGCTTGCACTGCAGCTGGGTACACACATCTAAATGTGAGAGACA
NGAGTTGTGTGGATGTTNGAATGGGGCTACTATGTAGTACAGTCCCAGAG
GGCTTGTCATGGGAGCACATTAGTCGATTCTATTGCTGAAAGATGCACTT
TTTCATCCCAGCTCTGCGGGAAAAGGGAAATATTC
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