EY659604

Overview
NameEY659604
Unique NameEY659604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659604_ssr247 microsatellite EY659604_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT1_ACACA (Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.277e-20
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 127
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT10_DICDI (Actin-10 OS=Dictyostelium discoideum GN=act10 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.277e-20
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: FGR_FSVGR (Tyrosine-protein kinase transforming protein Fgr OS=Feline sarcoma virus (strain Gardner-Rasheed) GN=V-FGR PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.212e-19
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:   29 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 149
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_PHARH (Actin OS=Phaffia rhodozyma PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.212e-19
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 127
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_COPC7 (Actin OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.212e-19
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 127
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_CANDC (Actin OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.212e-19
Identity = 57/149 (38.26%), Postives = 76/149 (51.01%), Query Frame = 1 
Query:  286 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            MD     A+VIDNG+G  K GFAG+  P  + P++V                      + G+M  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+P+    +RE   +IMFETF
Sbjct:    1 MDGEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSLVG------------------RPRHQGIMVGMGQKDSYVGDEAQSKR---GILTLRYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETF 128
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_BRUMA (Actin OS=Brugia malayi PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.212e-19
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACTM_APLCA (Actin, muscle OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.212e-19
Identity = 56/142 (39.44%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+V+DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVPPEEHPVLLTEAPLNPKANREKMTQIMFETF 128
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACTG_XENLA (Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.212e-19
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 127
[Close]
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACTG_TRIVU (Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.212e-19
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 127
The following BLAST results are available for this feature:
BLAST of EY659604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
ACT1_ACACA9.277e-2040.14Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1[more]
ACT10_DICDI9.277e-2040.14Actin-10 OS=Dictyostelium discoideum GN=act10 PE=1... [more]
FGR_FSVGR1.212e-1940.14Tyrosine-protein kinase transforming protein Fgr O... [more]
ACT_PHARH1.212e-1940.14Actin OS=Phaffia rhodozyma PE=3 SV=1[more]
ACT_COPC71.212e-1940.14Actin OS=Coprinopsis cinerea (strain Okayama-7 / 1... [more]
ACT_CANDC1.212e-1938.26Actin OS=Candida dubliniensis (strain CD36 / CBS 7... [more]
ACT_BRUMA1.212e-1940.14Actin OS=Brugia malayi PE=1 SV=1[more]
ACTM_APLCA1.212e-1939.44Actin, muscle OS=Aplysia californica PE=2 SV=1[more]
ACTG_XENLA1.212e-1940.14Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE... [more]
ACTG_TRIVU1.212e-1940.14Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659604 ID=EY659604; Name=EY659604; organism=Citrus sinensis; type=EST; length=935bp
CCACGCGTCCGGACAGTGATAGCAATGATGAAGAAGTTGATGAGCGAGGC
TTATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGT
ACCAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATT
CAAGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTC
CATTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCA
CCACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCT
CGTCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTT
TGCGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAA
ACGAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTT
GCACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGA
TGAAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATC
CTATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGG
CAGCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGGATCACTACTT
TCTGTTGACCGAGAGCCCGCTCACTGCTCCTGAGAGTAGAGAGTATACTG
GTGAGATCATGTTTGAGACTTTTATGTTCCTGGNNCTTATATTGCTGTGA
ATTCNGTGCTTGCACTGCAGCTGGGTACACACATCTAAATGTGAGAGACA
NGAGTTGTGTGGATGTTNGAATGGGGCTACTATGTAGTACAGTCCCAGAG
GGCTTGTCATGGGAGCACATTAGTCGATTCTATTGCTGAAAGATGCACTT
TTTCATCCCAGCTCTGCGGGAAAAGGGAAATATTC
back to top