EY659604

Overview
NameEY659604
Unique NameEY659604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659604_ssr247 microsatellite EY659604_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_HYDAT (Actin, non-muscle 6.2 OS=Hydra attenuata PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 56/142 (39.44%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+V+DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 56/141 (39.72%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  310 VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            +V DNGTG  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V+NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDAYVGDEAQSKR---GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_ENCCU (Actin OS=Encephalitozoon cuniculi GN=ECU01_0460 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 56/142 (39.44%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VID G+G  K GFAG+  P  + P++V   +                  + GVM  +   D ++GDEA TK       ++ YPI HG V+NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    7 ALVIDIGSGVVKSGFAGDDAPRAVFPSIVGFPK------------------HKGVMVGMGQKDAYVGDEAQTKR---GILHIKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKITQIMFETF 127          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_CRAGI (Actin OS=Crassostrea gigas PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 56/142 (39.44%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+V+DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_CHLRE (Actin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 57/142 (40.14%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+V DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    FN LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    9 ALVCDNGSGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLRYPIEHGIVTNWDDMEKIWHHTFFNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_CANAL (Actin OS=Candida albicans GN=ACT1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 56/149 (37.58%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  286 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            MD     A++IDNG+G  K GFAG+  P  + P++V                      + G+M  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+P+    +RE   +IMFETF
Sbjct:    1 MDGEEVAALIIDNGSGMCKAGFAGDDAPRAVFPSLVG------------------RPRHQGIMVGMGQKDSYVGDEAQSKR---GILTLRYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETF 128          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_ACHBI (Actin OS=Achlya bisexualis PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 55/142 (38.73%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLD---FFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+V+DNG+G  K GFAG+  P  + P++V   +                  + G+M  +D    ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPK------------------HPGIMVGMDQKDAYVGDEAQSKR---GVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETF 128          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACTY_LIMPO (Actin-11 OS=Limulus polyphemus PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 56/142 (39.44%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+V+DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACTM_PISOC (Actin, muscle OS=Pisaster ochraceus PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 56/142 (39.44%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+V+DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACTM_HELTB (Actin, cytoskeletal OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 56/142 (39.44%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+V+DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128          
The following BLAST results are available for this feature:
BLAST of EY659604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
ACT_HYDAT1.582e-1939.44Actin, non-muscle 6.2 OS=Hydra attenuata PE=3 SV=1[more]
ACT_GOSHI1.582e-1939.72Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT_ENCCU1.582e-1939.44Actin OS=Encephalitozoon cuniculi GN=ECU01_0460 PE... [more]
ACT_CRAGI1.582e-1939.44Actin OS=Crassostrea gigas PE=2 SV=1[more]
ACT_CHLRE1.582e-1940.14Actin OS=Chlamydomonas reinhardtii PE=2 SV=1[more]
ACT_CANAL1.582e-1937.58Actin OS=Candida albicans GN=ACT1 PE=3 SV=1[more]
ACT_ACHBI1.582e-1938.73Actin OS=Achlya bisexualis PE=3 SV=1[more]
ACTY_LIMPO1.582e-1939.44Actin-11 OS=Limulus polyphemus PE=2 SV=1[more]
ACTM_PISOC1.582e-1939.44Actin, muscle OS=Pisaster ochraceus PE=3 SV=1[more]
ACTM_HELTB1.582e-1939.44Actin, cytoskeletal OS=Heliocidaris tuberculata PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659604 ID=EY659604; Name=EY659604; organism=Citrus sinensis; type=EST; length=935bp
CCACGCGTCCGGACAGTGATAGCAATGATGAAGAAGTTGATGAGCGAGGC
TTATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGT
ACCAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATT
CAAGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTC
CATTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCA
CCACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCT
CGTCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTT
TGCGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAA
ACGAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTT
GCACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGA
TGAAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATC
CTATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGG
CAGCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGGATCACTACTT
TCTGTTGACCGAGAGCCCGCTCACTGCTCCTGAGAGTAGAGAGTATACTG
GTGAGATCATGTTTGAGACTTTTATGTTCCTGGNNCTTATATTGCTGTGA
ATTCNGTGCTTGCACTGCAGCTGGGTACACACATCTAAATGTGAGAGACA
NGAGTTGTGTGGATGTTNGAATGGGGCTACTATGTAGTACAGTCCCAGAG
GGCTTGTCATGGGAGCACATTAGTCGATTCTATTGCTGAAAGATGCACTT
TTTCATCCCAGCTCTGCGGGAAAAGGGAAATATTC
back to top