EY659602

Overview
NameEY659602
Unique NameEY659602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_STAAS (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476) GN=rpsA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR   R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_STAAR (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252) GN=rpsA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR   R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_STAAN (30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315) GN=rpsA PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR   R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_STAAM (30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsA PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR   R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_STAAC (30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL) GN=rpsA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR   R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 36/101 (35.64%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKL 340
            K + V+E+ + L+LS+R+A+ + + + L +G+++ G +  + PYG FI +G + GL+H+S+I+   +  I++  + GDT+K +I+  D+ +GR+SLS K L
Sbjct:  162 KLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKHL 262          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_STAS1 (30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K  E+D   +R++LS +   A   A+        L  G V+ G V  L  +GAF+DIGG++GL+HVS++SH+ V     V+  G+T+ V I S D+   R+SLS K   P+P + I+
Sbjct:  157 KVEELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIK 273          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_STAEQ (30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAM---------ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K  E+D E +R++LS RKA+         A     L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G+ +KV + S ++   R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIK 273          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_STAHJ (30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K  E+D E +R++LS RKA+  ++           L  G V+ G V  L  +GAF+DIGG++GL+HVS++SH+ V     V+  G  + V + S ++   R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIK 273          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_RHIME (30S ribosomal protein S1 OS=Rhizobium meliloti GN=rpsA PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 41/116 (35.34%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMI 364
            + +++D+ +  +V+S R  + +S+A+        L  G VV G V+++  YGAF+D+GGI+GLLHV+ ++  RV   + +L  G  +KV I+  ++   R+SL  K+LE  P D I
Sbjct:  161 EILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPWDGI 276          
The following BLAST results are available for this feature:
BLAST of EY659602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS1_STAAS2.202e-1441.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAR2.202e-1441.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAN2.202e-1441.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAM2.202e-1441.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAC2.202e-1441.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RR1_PORYE2.202e-1435.6430S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RS1_STAS11.427e-1337.6130S ribosomal protein S1 OS=Staphylococcus saproph... [more]
RS1_STAEQ1.427e-1339.8330S ribosomal protein S1 OS=Staphylococcus epiderm... [more]
RS1_STAHJ4.152e-1337.2930S ribosomal protein S1 OS=Staphylococcus haemoly... [more]
RS1_RHIME1.208e-1235.3430S ribosomal protein S1 OS=Rhizobium meliloti GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659602 ID=EY659602; Name=EY659602; organism=Citrus sinensis; type=EST; length=709bp
AATCAACTGCAGAAGAGCTTCTCGGTAAAGATCTTCCTCTAAGTTTGTGG
AGGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATG
GCTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGT
ACAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATG
GTCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCT
ACAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGA
CCGATAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCC
CTGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAG
ATGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCG
TGCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGG
ATGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGAT
TTGACTGACATTTCCCCAGCTGATGATTGAACTTAAATAGCAGTTGTATT
GTATCTTTTGCAACCCAAGACATATTATTAATTCTGTAAAATTTACTGCG
ATTGAAACTTNCAGCCAAATATGCAACTTCAAATTTTTTCCTCTTGGGTT
NAAAAAAAA
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