EY659602

Overview
NameEY659602
Unique NameEY659602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10018 contig Csv1_Contig10018:729..1438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_PSEAE (30S ribosomal protein S1 OS=Pseudomonas aeruginosa GN=rpsA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 39/112 (34.82%), Postives = 69/112 (61.61%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAM-ADSQAQ-------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D++++ +V+S R  + A++ A+       L  G  V G V++L  YGAF+D+GG++GLLH++ ++  R+   + ++  GD + V +L  DR R RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_HAEIN (30S ribosomal protein S1 OS=Haemophilus influenzae GN=rpsA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 39/112 (34.82%), Postives = 67/112 (59.82%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D++++ +V+S R  +    +Q        L  GS V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  D+ R RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_RICFE (30S ribosomal protein S1 OS=Rickettsia felis GN=rpsA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 39/117 (33.33%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K + +D++   +V+S R  + +S+++        +  G V+ GTV+++  YGAFID+G ++GLLH++ IS  RV   + VL+    +KVM++  D    R+SL  K+L+  P + I+
Sbjct:  168 KILSMDKKLDNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIK 284          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_COXBU (30S ribosomal protein S1 OS=Coxiella burnetii GN=rpsA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 39/112 (34.82%), Postives = 68/112 (60.71%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAM-----ADSQA---QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D+ ++ +V+S R  M     A+ QA   +L  G  + G ++++  YGAF+D+GG++GLLH++ ++  RV   + +L  GD + V +L  DR + RVSL  K+L   P
Sbjct:  151 KIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDP 262          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_BUCBP (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpsA PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 40/113 (35.40%), Postives = 71/113 (62.83%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ---------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D++++ +V+S R+A+ +S+           L  G +V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD +K+ IL  DR + RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVS-RRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDP 266          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_RICCN (30S ribosomal protein S1 OS=Rickettsia conorii GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 39/117 (33.33%), Postives = 69/117 (58.97%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K + +D++   +V+S R  + +S+++        +  G V+ GTV+++  YGAFID+G ++GLLH++ IS  RV   + VL     +KVM++  D    R+SL  K+L+  P + I+
Sbjct:  168 KILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIK 284          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_MYCTU (30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +E+D+ ++ +VLS R  +  +Q++        L  G++  G V S+  +GAF+D+GG++GL+HVS++S   +   + V+Q GD + V +L  D  R RVSLS K  +  P
Sbjct:  172 KIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: ISPH_CLOAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium acetobutylicum GN=ispH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 2
Query:   71 RLVLSNRKAMADSQA--QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            R +LS  K   +     +L  G VV G V+ L  +GAF++I G++GLLHVS+IS  RV   A VL+ GD +KV +LS D+   ++SLS KKL   P
Sbjct:  463 RALLSKEKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENP 558          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_RICTY (30S ribosomal protein S1 OS=Rickettsia typhi GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 38/117 (32.48%), Postives = 69/117 (58.97%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K + +D++   +V+S R  + +S+++        +  G ++ G V+++  YGAFID+G ++GLLH++ IS  RV   + VL+    +KVM++  D    R+SL  K+L+  P D I+
Sbjct:  168 KILSMDKKLGNIVVSRRVILEESRSEARDEMLSKIKEGMILEGVVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIK 284          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_RICPR (30S ribosomal protein S1 OS=Rickettsia prowazekii GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 39/117 (33.33%), Postives = 69/117 (58.97%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K + +D++   +V+S R  + +S+++        +  G V+ G V+++  YGAFID+G ++GLLH++ IS  RV   + VL+    +KVM++  D    R+SL  K+L+  P D I+
Sbjct:  168 KILSMDKKLGNIVVSRRVILEESRSEARDEMLSKIKEGIVLEGVVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIK 284          
The following BLAST results are available for this feature:
BLAST of EY659602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS1_PSEAE1.208e-1234.8230S ribosomal protein S1 OS=Pseudomonas aeruginosa... [more]
RS1_HAEIN1.208e-1234.8230S ribosomal protein S1 OS=Haemophilus influenzae... [more]
RS1_RICFE1.578e-1233.3330S ribosomal protein S1 OS=Rickettsia felis GN=rp... [more]
RS1_COXBU1.578e-1234.8230S ribosomal protein S1 OS=Coxiella burnetii GN=r... [more]
RS1_BUCBP1.578e-1235.4030S ribosomal protein S1 OS=Buchnera aphidicola su... [more]
RS1_RICCN2.061e-1233.3330S ribosomal protein S1 OS=Rickettsia conorii GN=... [more]
RS1_MYCTU2.061e-1235.7130S ribosomal protein S1 OS=Mycobacterium tubercul... [more]
ISPH_CLOAB2.061e-1244.794-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
RS1_RICTY3.515e-1232.4830S ribosomal protein S1 OS=Rickettsia typhi GN=rp... [more]
RS1_RICPR3.515e-1233.3330S ribosomal protein S1 OS=Rickettsia prowazekii ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659602 ID=EY659602; Name=EY659602; organism=Citrus sinensis; type=EST; length=709bp
AATCAACTGCAGAAGAGCTTCTCGGTAAAGATCTTCCTCTAAGTTTGTGG
AGGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATG
GCTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGT
ACAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATG
GTCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCT
ACAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGA
CCGATAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCC
CTGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAG
ATGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCG
TGCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGG
ATGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGAT
TTGACTGACATTTCCCCAGCTGATGATTGAACTTAAATAGCAGTTGTATT
GTATCTTTTGCAACCCAAGACATATTATTAATTCTGTAAAATTTACTGCG
ATTGAAACTTNCAGCCAAATATGCAACTTCAAATTTTTTCCTCTTGGGTT
NAAAAAAAA
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