EY659602

Overview
NameEY659602
Unique NameEY659602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10018 contig Csv1_Contig10018:729..1438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_PROSP (30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 40/112 (35.71%), Postives = 69/112 (61.61%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAM-ADSQAQ-------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D++++ +V+S R  + ++S A+       L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DR R RVSL  K+L   P
Sbjct:   50 KVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 161          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_MYCLE (30S ribosomal protein S1 OS=Mycobacterium leprae GN=rpsA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +E+D+ ++ +VLS R  +  +Q+        QL  G++  G V S+  +GAF+D+GG++GL+HVS++S   +   + V+Q G+ + V +L  D  R RVSLS K  +  P
Sbjct:  172 KIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDP 283          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_SHIFL (30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DR R RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_ECOLI (30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DR R RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_ECOL6 (30S ribosomal protein S1 OS=Escherichia coli O6 GN=rpsA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DR R RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_ECO57 (30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DR R RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_BUCAP (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpsA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 39/118 (33.05%), Postives = 67/118 (56.78%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRN 370
            K +++D++++ +V+S R  +    +         L  G  + G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V IL  D+ R RVSL  K+L   P   I N
Sbjct:  155 KVIKLDQKRNNVVVSRRAVIESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLKQLGEDPWIAISN 272          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_BUCAI (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpsA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + + IL  DR R RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_NEIMB (30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B GN=rpsA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 37/112 (33.04%), Postives = 68/112 (60.71%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K +++D++++ +V+S R  +  +  +        L  GSV+ G V+++  YGAF+D+GGI+GLLH++ ++  RV   + VL+ G  ++  +L  D+ + RVSL  K+L   P
Sbjct:  156 KVIKLDKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 267          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_RICBR (30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C) GN=rpsA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 37/117 (31.62%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K + +D++   +V+S R  + +S+++        +  G ++ GTV+++  YGAFID+G ++GLLH++ IS  RV   + VL+    +KVM++  +    R+SL  K+L+  P + I+
Sbjct:  171 KILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIKEGMILEGTVKNITDYGAFIDLGSVDGLLHLTDISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIK 287          
The following BLAST results are available for this feature:
BLAST of EY659602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS1_PROSP3.515e-1235.7130S ribosomal protein S1 (Fragment) OS=Providencia... [more]
RS1_MYCLE3.515e-1235.7130S ribosomal protein S1 OS=Mycobacterium leprae G... [more]
RS1_SHIFL5.996e-1233.9330S ribosomal protein S1 OS=Shigella flexneri GN=r... [more]
RS1_ECOLI5.996e-1233.9330S ribosomal protein S1 OS=Escherichia coli (stra... [more]
RS1_ECOL65.996e-1233.9330S ribosomal protein S1 OS=Escherichia coli O6 GN... [more]
RS1_ECO575.996e-1233.9330S ribosomal protein S1 OS=Escherichia coli O157:... [more]
RS1_BUCAP5.996e-1233.0530S ribosomal protein S1 OS=Buchnera aphidicola su... [more]
RS1_BUCAI5.996e-1233.9330S ribosomal protein S1 OS=Buchnera aphidicola su... [more]
RS1_NEIMB1.336e-1133.0430S ribosomal protein S1 OS=Neisseria meningitidis... [more]
RS1_RICBR1.744e-1131.6230S ribosomal protein S1 OS=Rickettsia bellii (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659602 ID=EY659602; Name=EY659602; organism=Citrus sinensis; type=EST; length=709bp
AATCAACTGCAGAAGAGCTTCTCGGTAAAGATCTTCCTCTAAGTTTGTGG
AGGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATG
GCTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGT
ACAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATG
GTCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCT
ACAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGA
CCGATAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCC
CTGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAG
ATGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCG
TGCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGG
ATGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGAT
TTGACTGACATTTCCCCAGCTGATGATTGAACTTAAATAGCAGTTGTATT
GTATCTTTTGCAACCCAAGACATATTATTAATTCTGTAAAATTTACTGCG
ATTGAAACTTNCAGCCAAATATGCAACTTCAAATTTTTTCCTCTTGGGTT
NAAAAAAAA
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