EY659602

Overview
NameEY659602
Unique NameEY659602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10018 contig Csv1_Contig10018:729..1438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_RHOPA (30S ribosomal protein S1 OS=Rhodopseudomonas palustris GN=rpsA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 2 
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            + +++D  +  +V+S R  + +++A+        L  G V+ G V+++  YGAF+D+GGI+GLLHV+ I+  RV     VL  G T+KV I+  +    R+SL  K+L   P
Sbjct:  164 QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDP 275
The following BLAST results are available for this feature:
BLAST of EY659602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS1_RHOPA2.278e-1134.8230S ribosomal protein S1 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659602 ID=EY659602; Name=EY659602; organism=Citrus sinensis; type=EST; length=709bp
AATCAACTGCAGAAGAGCTTCTCGGTAAAGATCTTCCTCTAAGTTTGTGG
AGGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATG
GCTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGT
ACAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATG
GTCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCT
ACAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGA
CCGATAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCC
CTGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAG
ATGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCG
TGCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGG
ATGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGAT
TTGACTGACATTTCCCCAGCTGATGATTGAACTTAAATAGCAGTTGTATT
GTATCTTTTGCAACCCAAGACATATTATTAATTCTGTAAAATTTACTGCG
ATTGAAACTTNCAGCCAAATATGCAACTTCAAATTTTTTCCTCTTGGGTT
NAAAAAAAA
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