EY659599

Overview
NameEY659599
Unique NameEY659599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC3_PONAB (Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 6.858e-79
Identity = 139/244 (56.97%), Postives = 173/244 (70.90%), Query Frame = 3
Query:  156 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLPXC---PLDDGIDDESYHYFVKPDIXKMME 878
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL  ++P   Q     L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWA GLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV EAFY TDRV   S HK+   F   G   +  +  ES    C   PL DGIDD+SY +  +P I ++++
Sbjct:    3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFF-PGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVD 245          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC3_MOUSE (Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 6.858e-79
Identity = 139/244 (56.97%), Postives = 173/244 (70.90%), Query Frame = 3
Query:  156 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLPXC---PLDDGIDDESYHYFVKPDIXKMME 878
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL  ++P   Q     L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWA GLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV EAFY TDRV   S HK+   F   G   +  +  ES    C   PL DGIDD+SY +  +P I ++++
Sbjct:    3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFF-PGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVISQVVD 245          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC3_HUMAN (Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 6.858e-79
Identity = 139/244 (56.97%), Postives = 173/244 (70.90%), Query Frame = 3
Query:  156 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLPXC---PLDDGIDDESYHYFVKPDIXKMME 878
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL  ++P   Q     L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWA GLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV EAFY TDRV   S HK+   F   G   +  +  ES    C   PL DGIDD+SY +  +P I ++++
Sbjct:    3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFF-PGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVD 245          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.170e-78
Identity = 143/242 (59.09%), Postives = 172/242 (71.07%), Query Frame = 3
Query:  156 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLP-XCPLDDGIDDESYHYFVKPDIXKMME 878
            RKV YFYD EVGN+YYG  HPMKPHR+RMTH L+ +YG+ + MQ+ +P  A E +L  FH+DDY++FL  +TP+   D   QL +FNV EDCPVFDG+++FCQ  +GGS+G AVK+N    D+AINWA GLHHAKK EASGFCY NDIVL+ILELLK HERVLY+DIDIHHGDGV EAFYTTDRV   S HK+   F   G    +   K        PL DGIDDESY    +P I  +M+
Sbjct:    4 RKVSYFYDNEVGNHYYGPNHPMKPHRMRMTHDLVLNYGIYKKMQIFRPRKASELELTNFHSDDYINFLKLVTPDNMHDYSKQLVKFNVREDCPVFDGMYNFCQISSGGSIGCAVKVNSKESDVAINWAGGLHHAKKSEASGFCYTNDIVLSILELLKHHERVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGDYFPGTGDVKDIGADKGKYYSLNFPLKDGIDDESYQSIFRPIIRSVMD 245          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC3_CHICK (Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.606e-78
Identity = 136/243 (55.97%), Postives = 170/243 (69.96%), Query Frame = 3
Query:  156 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFL--VQGIYVILXIRKESLLPXCPLDDGIDDESYHYFVKPDIXKMME 878
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL  ++P   Q     L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWA GLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV EAFY TDRV   S HK+   F      +Y +            PL DGIDD+SY +  +P I ++++
Sbjct:    3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYALNVPLRDGIDDQSYKHLFQPVINQVVD 245          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDA1_CAEEL (Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.606e-78
Identity = 142/243 (58.44%), Postives = 171/243 (70.37%), Query Frame = 3
Query:  153 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLP-XCPLDDGIDDESYHYFVKPDIXKMME 878
            KR+V Y+YD  +GNYYYGQGH MKPHRIRMTH L+ +YGL +N+++ +PFPA   D+ RFH+D+Y++FL S  P+  +    Q+ +FNVGEDCP+FDGL+ FCQ  +GGS+  A KLN    DIAINW  GLHHAKK EASGFCY NDIVL ILELLK H+RVLYVDID+HHGDGV EAFYTTDRV   S HK+   F   G    +   K  L     PL DGI D SY    KP + K+ME
Sbjct:   12 KRRVAYYYDSNIGNYYYGQGHVMKPHRIRMTHHLVLNYGLYRNLEIFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGILELLKYHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGDLKDIGAGKGKLYSVNVPLRDGITDVSYQSIFKPIMTKVME 254          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC3_XENLA (Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 3.403e-78
Identity = 139/244 (56.97%), Postives = 171/244 (70.08%), Query Frame = 3
Query:  156 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLPXC---PLDDGIDDESYHYFVKPDIXKMME 878
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL  ++P   Q     L  FNVG+DCPVF GLF FC  Y G S+ GA  LN+  CDIAINWA GLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV EAFY TDRV   S HK+   F   G   +  +  ES    C   PL DGIDD+SY +  +P I ++++
Sbjct:    3 KTVAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLLNNKNCDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFF-PGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVIKQVID 245          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: RPD3_YEAST (Histone deacetylase RPD3 OS=Saccharomyces cerevisiae GN=RPD3 PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 8.383e-77
Identity = 132/243 (54.32%), Postives = 174/243 (71.60%), Query Frame = 3
Query:  153 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXI-RKESLLPXCPLDDGIDDESYHYFVKPDIXKMME 878
            KR+V YFYD +VGNY YG GHPMKPHRIRM H+L+ +YGL + M++ +  PA ++++C+FH D+Y+ FL  +TP+  +    +  +FNVG+DCPVFDGL+ +C    GGS+ GA +LN G CD+A+N+A GLHHAKK EASGFCY+NDIVL I+ELL+ H RVLY+DID+HHGDGV EAFYTTDRV  CS HK+   F   G    + +   ++     PL DGIDD +Y    +P I K+ME
Sbjct:   18 KRRVAYFYDADVGNYAYGAGHPMKPHRIRMAHSLIMNYGLYKKMEIYRAKPATKQEMCQFHTDEYIDFLSRVTPDNLEMFKRESVKFNVGDDCPVFDGLYEYCSISGGGSMEGAARLNRGKCDVAVNYAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHPRVLYIDIDVHHGDGVEEAFYTTDRVMTCSFHKYGEFFPGTGELRDIGVGAGKNYAVNVPLRDGIDDATYRSVFEPVIKKIME 260          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: CLR6_SCHPO (Histone deacetylase clr6 OS=Schizosaccharomyces pombe GN=clr6 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.846e-75
Identity = 137/243 (56.38%), Postives = 165/243 (67.90%), Query Frame = 3
Query:  153 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXI-RKESLLPXCPLDDGIDDESYHYFVKPDIXKMME 878
            K+KV YFYD +VGNY+YG  HPMKPHR+RM H L+ +Y L + + V+ P  A   D+ R H D+Y+ FL  +TP+T +       +FNVG+DCPVFDGL+ FC   AGGS+G A +LN G  +IAINWA GLHHAKK EASGFCYVNDI LA LELLK H+RVLY+DID+HHGDGV E FYTTDRV  CS HKF   F   G      I   ++     PL DGIDDESY    KP I  +M+
Sbjct:    5 KKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRCHTDEYIEFLWRVTPDTMEKFQPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQELNSGNAEIAINWAGGLHHAKKREASGFCYVNDIALAALELLKYHQRVLYIDIDVHHGDGVEEFFYTTDRVMTCSFHKFGEYFPGTGHIKDTGIGTGKNYAVNVPLRDGIDDESYESVFKPVISHIMQ 247          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDA12_DICDI (Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 6.217e-72
Identity = 135/244 (55.33%), Postives = 172/244 (70.49%), Query Frame = 3
Query:  153 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFL--VQGIYVILXIRKESLLPXCPLDDGIDDESYHYFVKPDIXKMME 878
            K +VCYF+D +VGNY+YG  HPMKPHR+ +T+ L+ +YGL + M + K  PA   D+ +FH++DYV FL  +TPE + ++   +KRF++GEDCPVF GL+ +C  Y+GGS+ GA+KLNH + DIAINW+ GLHHA+K EASGFCYVNDIVLAILELLK H RVLY+DID+HHGDGV EAFY TDRV   S HKF   F      I  I     +      PL DGIDD++Y    KP I  +M+
Sbjct:   12 KTRVCYFFDQDVGNYFYGPYHPMKPHRLCLTNNLVLNYGLHKKMHLYKARPADAEDMLKFHSEDYVDFLERVTPE-NINEWKDVKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGLHHARKDEASGFCYVNDIVLAILELLKFHARVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFGGDFFPGTGDIDEIGAKTGKLYSVNVPLADGIDDKNYLNIFKPVIQGVMD 254          
The following BLAST results are available for this feature:
BLAST of EY659599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HDAC3_PONAB6.858e-7956.97Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=... [more]
HDAC3_MOUSE6.858e-7956.97Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=... [more]
HDAC3_HUMAN6.858e-7956.97Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=... [more]
HDA11_DICDI1.170e-7859.09Type-1 histone deacetylase 1 OS=Dictyostelium disc... [more]
HDAC3_CHICK2.606e-7855.97Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE... [more]
HDA1_CAEEL2.606e-7858.44Histone deacetylase 1 OS=Caenorhabditis elegans GN... [more]
HDAC3_XENLA3.403e-7856.97Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 P... [more]
RPD3_YEAST8.383e-7754.32Histone deacetylase RPD3 OS=Saccharomyces cerevisi... [more]
CLR6_SCHPO7.846e-7556.38Histone deacetylase clr6 OS=Schizosaccharomyces po... [more]
HDA12_DICDI6.217e-7255.33Histone deacetylase B OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659599 ID=EY659599; Name=EY659599; organism=Citrus sinensis; type=EST; length=944bp
CGCAAGTTAAGCCCCATCTGTTTTATTCTCTTGAGGTCTCGTCCCGTTGC
ATTCTTAGTTAGTGTTGGCTCTCCCAGTAAGTGCAGGCCCCAAGAAATAT
TATTCATATGGACACTGGAGGCAATTCTTTACCATCTGGTACTGATGGCG
TTAAGAGAAAGGTGTGTTATTTCTACGACCCAGAGGTGGGCAATTACTAC
TATGGACAGGGTCACCCGATGAAACCCCATCGCATTCGTATGACCCATGC
CCTTCTCGCCCACTACGGCTTGCTTCAGAACATGCAGGTCCTCAAACCTT
TTCCTGCTAGGGAAAGGGATCTTTGCCGCTTCCATGCCGATGATTATGTC
TCCTTCCTCATGAGTATCACCCCTGAGACTCATCAGGATCAGCTTATGCA
GCTCAAGCGCTTTAATGTTGGTGAAGATTGCCCTGTCTTTGACGGTCTTT
TCTCCTTCTGTCAAACTTATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAG
TTGAATCACGGCCTCTGTGATATTGCTATCAATTGGGCCCGTGGCCTTCA
TCATGCTAAGAAATGTGAAGCTTCCGGATTCTGTTATGTCAATGACATTG
TCTTGGCCATTTTGGAGCTACTTAAGCAGCATGAGCGTGTATTATATGTA
GATATTGATATCCATCATGGAGATGGCGTTGGAGAAGCATTTTATACAAC
TGATAGGGTAAATGACTGTTCATTNCATAAGTTCGAGATTATTTTCCTGG
TACAGGGGATATACGTGATATTGGNTATTCGAAAGGAAAGTCTACTNCCT
NAATGTCCTCTTGATGATGGNATCGATGATGAAAGCTACCATTACTTTGT
CAAACCCGATATCNGAAAAATGATGGAGGTTTTAAACCTGGTGCTGTGGT
CCTNCATGGGGGGCTGACTCATGTCTGGGGAAAGTTTAGATGCT
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