EY659595

Overview
NameEY659595
Unique NameEY659595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659595 vs. ExPASy Swiss-Prot
Match: APAG_PHOPR (Protein apaG OS=Photobacterium profundum GN=apaG PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 3
Query:   15 IRVQVRRVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 362
            I+  V   YIE++S+P   +Y F+Y + I N  +   +LL R+W+ITDANGK   I G GV+GEQP I  N  + Y+S   + TP G M+G + M   D    +TF   ++PF L+
Sbjct:    9 IKCNVVTHYIEEQSEPNNQRYVFSYTITIRNLGKGSAKLLSRYWLITDANGKRLVIEGEGVVGEQPEIKMNEEYTYTSGTIIETPLGVMQGHYVMGTED---GETFKAEVSPFRLA 121          
BLAST of EY659595 vs. ExPASy Swiss-Prot
Match: APAG_AZOSB (Protein apaG OS=Azoarcus sp. (strain BH72) GN=apaG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.791e-17
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 3
Query:    6 TLGIRVQVRRVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 362
            T  I V+    Y+E +S P    Y FAY + I N      +L+ RHW+ITD  G  + + G GV+GEQP++ P  SF Y+S   L T  G M G ++M+  D      F+  I  F L+
Sbjct:    6 TYRIEVEAVAEYVEAQSNPEDDHYVFAYNITIRNTGTVAARLVSRHWVITDGTGHVQEVHGQGVVGEQPLLAPGESFRYTSGSVLETAVGTMHGSYQMEASD---GHRFDAPIPAFMLA 121          
BLAST of EY659595 vs. ExPASy Swiss-Prot
Match: APAG_CHRSD (Protein apaG OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=apaG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 46/116 (39.66%), Postives = 63/116 (54.31%), Query Frame = 3
Query:   15 IRVQVRRVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 362
            I+V V   Y    S P   +Y F+Y + + N S   +QLL RHW IT ++GK + + G GVIG+QP+I P   F Y+S   L  P G MEG +    +D    + F V IA F L+
Sbjct:    8 IQVHVEPEYQAGESAPGDQRYVFSYTITVHNRSAHSIQLLARHWKITQSSGKVQEVRGKGVIGQQPLIGPGQQFRYTSRAVLDGPVGVMEGSYTC--LDTTEQRAFEVPIAAFRLA 121          
BLAST of EY659595 vs. ExPASy Swiss-Prot
Match: FBX3_MOUSE (F-box only protein 3 OS=Mus musculus GN=Fbxo3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 48/124 (38.71%), Postives = 65/124 (52.42%), Query Frame = 3
Query:    3 TTLGIRVQVRRVYIEDRSQPLKGQYFFAYRVRITNNS----ERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 362
            TT  I V V   ++ + S      YFF YR+RI  +     E+  QL  R+W IT+A G  E + G GV+GE P+I P   +EY+S    ST SG MEG +   H      + FNVAI  F ++
Sbjct:  280 TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSRDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRIYEYTSCTTFSTTSGYMEGYYTF-HFLYFKDKVFNVAIPRFHMA 402          
BLAST of EY659595 vs. ExPASy Swiss-Prot
Match: FBX3_HUMAN (F-box only protein 3 OS=Homo sapiens GN=FBXO3 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 48/124 (38.71%), Postives = 65/124 (52.42%), Query Frame = 3
Query:    3 TTLGIRVQVRRVYIEDRSQPLKGQYFFAYRVRITNNS----ERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 362
            TT  I V V   ++ + S      YFF YR+RI  +     E+  QL  R+W IT+A G  E + G GV+GE P+I P   +EY+S    ST SG MEG +   H      + FNVAI  F ++
Sbjct:  280 TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTTSGYMEGYYTF-HFLYFKDKIFNVAIPRFHMA 402          
BLAST of EY659595 vs. ExPASy Swiss-Prot
Match: PDIP2_MOUSE (Polymerase delta-interacting protein 2 OS=Mus musculus GN=Poldip2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 48/126 (38.10%), Postives = 64/126 (50.79%), Query Frame = 3
Query:    3 TTLGIRVQVRRVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVI-LPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDD 377
            TT  IRV V   Y+  R       Y++ Y +R+ N     VQL  RHW I   +G  E + G GV+G +PV+     +F+YSS   L   SG M G F  +  D  GS  F+V I PFSL +  D+
Sbjct:  237 TTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPD--GSH-FDVRIPPFSLESNKDE 359          
BLAST of EY659595 vs. ExPASy Swiss-Prot
Match: PDIP2_HUMAN (Polymerase delta-interacting protein 2 OS=Homo sapiens GN=POLDIP2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 48/126 (38.10%), Postives = 64/126 (50.79%), Query Frame = 3
Query:    3 TTLGIRVQVRRVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVI-LPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDD 377
            TT  IRV V   Y+  R       Y++ Y +R+ N     VQL  RHW I   +G  E + G GV+G +PV+     +F+YSS   L   SG M G F  +  D  GS  F+V I PFSL +  D+
Sbjct:  237 TTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPD--GSH-FDVRIPPFSLESNKDE 359          
BLAST of EY659595 vs. ExPASy Swiss-Prot
Match: APAG_DEIRA (Protein apaG OS=Deinococcus radiodurans GN=apaG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 43/127 (33.86%), Postives = 64/127 (50.39%), Query Frame = 3
Query:   15 IRVQVRRVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSDSF*N 395
            I V V+  ++  +S P +    FAY + I NN++   +LL RHW IT  +G+   + G GV+GEQP++ P   + Y+S   +    GRMEG + M        QT  V I PF L    +  +   N
Sbjct:    7 ITVSVQVHHLPAQSTPQR--QLFAYFITIENNTDDSWKLLSRHWTITSGDGQQFTVEGEGVVGEQPLLAPGAQYTYNSFVTVDALPGRMEGHYVM---GDAWGQTAQVPIPPFRLDIAPESGERLLN 128          
The following BLAST results are available for this feature:
BLAST of EY659595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
APAG_PHOPR2.678e-1740.52Protein apaG OS=Photobacterium profundum GN=apaG P... [more]
APAG_AZOSB7.791e-1736.97Protein apaG OS=Azoarcus sp. (strain BH72) GN=apaG... [more]
APAG_CHRSD1.736e-1639.66Protein apaG OS=Chromohalobacter salexigens (strai... [more]
FBX3_MOUSE2.771e-1438.71F-box only protein 3 OS=Mus musculus GN=Fbxo3 PE=2... [more]
FBX3_HUMAN2.771e-1438.71F-box only protein 3 OS=Homo sapiens GN=FBXO3 PE=2... [more]
PDIP2_MOUSE1.986e-1238.10Polymerase delta-interacting protein 2 OS=Mus musc... [more]
PDIP2_HUMAN1.986e-1238.10Polymerase delta-interacting protein 2 OS=Homo sap... [more]
APAG_DEIRA1.986e-1233.86Protein apaG OS=Deinococcus radiodurans GN=apaG PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659595 ID=EY659595; Name=EY659595; organism=Citrus sinensis; type=EST; length=606bp
CAACAACCTTGGGGATAAGGGTTCAAGTTAGACGTGTGTACATTGAGGAC
CGTAGTCAACCTTTGAAGGGGCAGTACTTTTTCGCATATAGGGTAAGAAT
TACCAATAACTCAGAACGTCCTGTTCAACTTCTCAGACGGCATTGGATTA
TCACAGATGCAAACGGAAAAACTGAAAACATCTTAGGAGTTGGAGTCATT
GGTGAACAGCCAGTTATACTTCCTAATACCAGTTTTGAATACTCTTCAGC
ATGCCCTTTAAGCACTCCGAGTGGCAGAATGGAAGGTGATTTTGAGATGA
AACATGTTGATAGAGTAGGTTCACAAACTTTCAATGTGGCGATTGCACCT
TTTTCTCTATCCACAATGGGTGATGACAGTGATTCTTTTTAGAACTGGTA
TTAGGCGTCTCTGTGGAGGGTTGAGGCGCCATATCCCTGTCATGGTTGAT
TATTTTCAGAATTATAAATCAATGCATTGCAATATGTAAGTGTAATTATT
GGTCTATAAGCTCTTCATTTGTTTCTCTGCAAGGATCATATGTAGCAAAC
TTTCAAAAGAAATCAATTAATAATAAGTGTATTATAGCTAAAAAAAAAAA
AAAAAA
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