EY659570

Overview
NameEY659570
Unique NameEY659570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9434 contig Csv1_Contig9434:695..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659570 vs. ExPASy Swiss-Prot
Match: CNRB_DICDI (CLPTM1-like membrane protein cnrB OS=Dictyostelium discoideum GN=cnrB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.026e-38
Identity = 74/120 (61.67%), Postives = 87/120 (72.50%), Query Frame = 2 
Query:   32 FSLMYERHNSWYSWILSSLTSCVYMFGFTMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGEDDKVSDGTE 391
            +SL Y  H SWYSW++SSL   VY F F MM PQLFINYKLKSV+HLPWR   Y+ LNT IDDLFAF+IKMP LHRLS  RDD++F++YLYQRWIY VDK R +      E+ +  D  E
Sbjct:  460 YSLYYHEHKSWYSWVVSSLVRTVYTFEFIMMTPQLFINYKLKSVSHLPWRVFMYRALNTFIDDLFAFIIKMPLLHRLSCLRDDIIFIVYLYQRWIYPVDKKRSHYGSEEAEEVQQQDKKE 579
The following BLAST results are available for this feature:
BLAST of EY659570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CNRB_DICDI1.026e-3861.67CLPTM1-like membrane protein cnrB OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659570 ID=EY659570; Name=EY659570; organism=Citrus sinensis; type=EST; length=859bp
ATTACAGGCTCGACCCCGCGTCCGCCTCTTTTTCTCGCTCATGTATGAGC
GCCATAACAGTTGGTACTCTTGGATTCTTTCTTCTCTCACTAGCTGTGTT
TACATGTTTGGTTTCACTATGATGTGCCCGCAACTGTTTATTAACTATAA
GCTTAAGTCTGTGGCGCATCTACCCTGGAGGCAAATGACATACAAGTTCC
TGAACACCATAATTGATGATCTTTTTGCCTTTGTCATTAAAATGCCAACA
CTGCATCGGCTTTCCGTGTTTCGTGATGATCTTGTATTCTTGATATATCT
ATACCAGAGATGGATTTATAAAGTGGACAAGACACGTGTAAATGAATTTG
GTTTTGCTGGTGAGGATGATAAGGTTTCTGATGGTACAGAGACAGATGCA
CTTATCAGTAAGGAGGATAAGAAAACCAATTGAAAATAGAAAGGTGCAAC
TTCAAGGGAAGGATTTGATAAGAAAACTAACTGAGCAAGGTTTCAGTTAA
TTATATTTCAACAGATTTTGTGTAAAATTTGTTTAGGATAAAAATTATTC
TTTCCATATTTCGTTTTAGATAATCACATTATAATGTTGTTCCTGAGGGA
TTTGATTTTAGGTCTTTTCCTTGTGTTGCTATTAGAATTATTGTCTATCC
CTTTTTTGCCTTGTGGAAAGAAATGTATGAAATCGCAGCATAATAGAATG
TTGTTGGAGCACCTTCAAGGATTCTGTAACAGCTTGGTAGCATCAACAGA
TGCCGTGGCTGCTGATAGAATAGCTCAGCTGACAGCTTGGCATGTATACT
CTTTTTTCCCAATTTAATTTGAGCTATGGAATTGTTTTCAAAAAAAAAAA
AAAAAAAAA
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