EY659568

Overview
NameEY659568
Unique NameEY659568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.727e-18
Identity = 61/178 (34.27%), Postives = 95/178 (53.37%), Query Frame = 3
Query:   12 MKNEFMVNRDGL-----RT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME*TILRRWIEE 530
            +K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+   +R  +E    +    L+ +             P  M+DF+ A ++V     S+S +  D+   E     +WI E
Sbjct:  330 VKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDEMH---------MPTTMEDFEIALKKV-----SKSVSAADIEKYE-----KWIVE 488          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.140e-17
Identity = 61/178 (34.27%), Postives = 97/178 (54.49%), Query Frame = 3
Query:   12 MKNEFMVNRDGL-----RT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME*TILRRWIEE 530
            +K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV++E IA   DGYSG+D+ N+C  A+   +R  +E    +    L+ +             P  M+DF+ A ++V     S+S + +D+   E     +WI E
Sbjct:  326 VKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDDMH---------MPTTMEDFEMALKKV-----SKSVSASDIEKYE-----KWIFE 484          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.140e-17
Identity = 62/180 (34.44%), Postives = 100/180 (55.56%), Query Frame = 3
Query:   12 MKNEFMVNRDGL-----RT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE--NEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME*TILRRWIEE 530
            +K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++R+ L + ELA+DVD+  IA  ++GYSG+D+ N+C  A+   +R  +E    +  R ++ AE              P  M+DF+ + ++V     S+S + +DL   E     +WIEE
Sbjct:  324 VKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNISRAEMH-----------MPTTMEDFESSLKKV-----SKSVSASDLEKYE-----KWIEE 482          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.140e-17
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 3
Query:   12 MKNEFMVNRDGL-----RT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSS 464
            +K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+   +R  +E    +    L++              P  M+DF+ A ++V   VS+
Sbjct:  329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMH---------MPTTMEDFEMALKKVSKSVSA 475          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.140e-17
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 3
Query:   12 MKNEFMVNRDGL-----RT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSS 464
            +K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+   +R  +E    +    L++              P  M+DF+ A ++V   VS+
Sbjct:  329 VKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMH---------MPTTMEDFEMALKKVSKSVSA 475          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.140e-17
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENE 332
            MK +FM   DGL T    +V+++ ATNRP DLD A++RR+P R  +N P+   R+ I+++IL  E + S V+L  IA   DG+SGSDL+ +C  AA   +R+ +  E
Sbjct:  216 MKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILRRMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAALLCVRDFVHQE 322          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.489e-17
Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-EELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL-ENEKNDRALALAENRASPSLYS 389
            +K EF++  DG+++   ERVLV+ ATNRP +LDEAV+RR  +R+ V LP    R K+++ +L+K     S  +L  +A + DGYSGSDL +L   AA  PIRE+  E  +N  A  + + R S  L S
Sbjct:  414 LKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRELKPEQVRNMSAHEMRDIRISDFLES 541          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.944e-17
Identity = 52/148 (35.14%), Postives = 88/148 (59.46%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL---EGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQV 446
            MK EF++  DG+ +   +R+LV+ ATNRP +LD A++RR P+R+++++P+A  R K+I  +L K + + D+ L   + +A    GYS SDL  LC  AA  PIR++  + K+ + L             S ++RP+ + DF+ A + +
Sbjct:  298 MKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILRRFPKRILIDVPNAAARLKLIMSLLEKTKTSFDLGLTQRQILAEWTHGYSNSDLVALCREAAMVPIRDL--SRKDIKNLV------------STELRPITLRDFEIAMKAI 431          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.944e-17
Identity = 54/157 (34.39%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNM 479
            +K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   SD + + +   +DG+SG+D+  LC  A+  PIR +              + A  +  S   VRP+   DF+ A + V   VS +   +
Sbjct:  529 IKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPIRSL--------------HAADIATISPDQVRPIAYIDFENAFKTVRPTVSPKDLEL 671          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.539e-17
Identity = 58/157 (36.94%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNM 479
            +K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE  + ++ ++E I   ADG+SG+D+  LC  AA  PIR I   +  D +   AE            VRP+   DF+ A   V   VS +   +
Sbjct:  501 IKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIRSI---QLMDISTITAE-----------QVRPIAYIDFQSAFLVVRPSVSQKDLEL 643          
The following BLAST results are available for this feature:
BLAST of EY659568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
KTNA1_CHICK8.727e-1834.27Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
KTNA1_XENLA1.140e-1734.27Katanin p60 ATPase-containing subunit (Fragment) O... [more]
KTNA1_SALSA1.140e-1734.44Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
KTNA1_MACFA1.140e-1735.90Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN1.140e-1735.90Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
ATD1B_DANRE1.140e-1742.99ATPase family AAA domain-containing protein 1-B OS... [more]
SPAST_DANRE1.489e-1742.97Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
SPAST_BRUMA1.944e-1735.14Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
FIGL1_MOUSE1.944e-1734.39Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
FIGL1_XENLA2.539e-1736.94Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659568 ID=EY659568; Name=EY659568; organism=Citrus sinensis; type=EST; length=938bp
CTATGCTTTTTATGAAGAATGAATTCATGGTTAACCGGGATGGTTTGCGC
ACATAAGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGC
TGATGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCAC
ATTGTCCCATACGGGAAATTTTGGAGAATGAAAAGAACGACAGAGCTTTA
GCATTGGCCGAGAATAGAGCTTCACCTTCATTGTACAGCAGCGTCGACGT
TCGCCCTCTGATTATGGACGATTTCAAATATGCACATGAGCAGGTGTGTG
CAATTGTATCATCAGAGTCTACAAATATGAATGATCTCCCTTCAATGGAA
TGAACTATACTGAGAAGGTGGATCGAAGAAAAAGAAATCTCTGAGCTACT
TTATGCAAAGGGGGATTCTTTTTGAATACCATTCTTGGGTGGGTCATTCC
CCTCTTCATCCTATATGGTGCCAAGATCACGGACCTGTATTTATGGAAAA
TTCTGGAGGGCCGTCCCCTTTTACTTGGAAAAATATACGCTTTTGAACCT
CTTCCCCTTTGGTTAGAAATTCTTTTGTTATATTCTTAACAAGGGTAACT
TAACTCAAATAGGCATTTCCCCTTCCATAAACCGCGACTTTGTTTTTTTG
GCCCTCCAGATGCGTAATAACATTGTGTTAAATCTTGCGAAATATAAGAA
AACAATAATAAACAGGGCCGCCGCTCAGAGGATCAACGTTCCCNACCGGC
TAGCCACGCTTTCTCTTCTTTGTGCCCCCAAATTCATC
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