EY659568

Overview
NameEY659568
Unique NameEY659568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 299
            N+ +V  DG  T D   ++V+AATNRP  LD A++R  R  R++ +  PD   R +I++V    ++LA DVDLE +A    G++G+DL+NL   AA
Sbjct:  280 NQLLVEMDGFDTSDG--IIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAA 373          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNL----CVTAAHCPIREILENEKND 341
            N+ +   DG        V+VLAATNRP  LD A++R  R  R++ V+ PD   R KI+ V    + LA DVD E IA    G++G+DL+NL     + AA   ++EI ++E +D
Sbjct:  356 NQLLTEMDGFA--GNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILEVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISD 467          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11
Identity = 49/144 (34.03%), Postives = 77/144 (53.47%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI--------LENEKNDRALALAENRASPSLYSS--VDVRP 407
            +K EF+V  +G+   D+  VLVL ATN P+ LD A+ RR  +R+ + LP+A  R ++  + + K   EL S  D + +A M DGYSGSD+  +   A   P+R I        + + K++R L    +   P  + S  ++V P
Sbjct:  248 IKTEFLVQMNGVGK-DESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQ-DFKELAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHFKEVYDNKSNRTLVTPCSPGDPDAFESSWLEVNP 389          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA-------HCPIREILENEKNDRALA 353
            N+ +V  DG      E ++++AATNR   LD A++R  R  R++ VN PD   RE++++V    + L  DV+L+ IA    G+SG+DL+NL   AA       H  I  I   E  DR +A
Sbjct:  290 NQLLVEMDGFSA--NEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIATRTPGFSGADLENLLNEAALVAARHDHTKISMIHIEEAIDRVIA 408          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.058e-11
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   39 DGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 323
            DGL    +  V+V+AATNRP  +D A+ R  R  R + + +PD   R++I+ +   K  LA DVDLE +A + +G+ G+DL+ LC  AA   +R +L
Sbjct:  311 DGLEA--RGDVIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAAMHALRRVL 405          

HSP 2 Score: 68.1662 bits (165), Expect = 7.912e-11
Identity = 38/105 (36.19%), Postives = 65/105 (61.90%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 326
            ++ +   DGL   + + V+V+AATNRP  +D A++R  RL R + +  PD   R +I ++ L  + LA DV++E +A   +GYSG+D++ +C  A    IRE+++
Sbjct:  578 SQLLTELDGLE--ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVCREAGMLAIRELIK 680          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.058e-11
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 317
            N+ +   DG+   + + V+V+AATNRP  +D A++R  RL R ++V +PD   R  I ++      LA DV+LE +A   +GY+G+D++ LC  AA   +RE
Sbjct:  575 NQLLTELDGME--EPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIEALCREAAMLAVRE 674          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.912e-11
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 3
Query:   66 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 320
            RVLVL ATN P+ +D+A  RR  R+L + LPD   R   ++ ++AK++ +  D+D E I  M +G+SGSDL +L   AA  PIR++
Sbjct:  618 RVLVLGATNLPWAIDDAARRRFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIRDL 703          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.912e-11
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 314
            N+ +V  DG    +   +++LAATNRP  LD A++R  R  R++ V+ PD   RE I+R+     +LA +VDL+ +A +  GYSG+DL N+   AA   +R
Sbjct:  264 NQLLVEMDGFD--NTTGLILLAATNRPDVLDPALLRPGRFDRQVCVDRPDLKGREAILRIHAQNVKLAPEVDLKAVARITGGYSGADLANVVNEAALLAVR 362          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.912e-11
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPI-REILENEKNDRALALAENRASPSLYSSV 395
            N+ +   DG        V+VLAATNRP  LD A++R  R  R++ V+ PD   R KI++V    + LA DVD + IA    G++G DL+NL   AA     R++ E  K++ A AL    A P   ++V
Sbjct:  377 NQLLTEMDGFS--GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGVDLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAV 503          
The following BLAST results are available for this feature:
BLAST of EY659568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FTSH_AQUAE2.719e-1141.67Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH1_ORYSJ2.719e-1139.47Cell division protease ftsH homolog 1, chloroplast... [more]
VPS4_SCHPO3.551e-1134.03Suppressor protein of bem1/bed5 double mutants OS=... [more]
FTSH_BACPF4.638e-1137.19Cell division protease ftsH homolog OS=Bacillus ps... [more]
Y1297_ARCFU6.058e-1140.21Cell division cycle protein 48 homolog AF_1297 OS=... [more]
Y1156_METJA6.058e-1138.24Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
TBP6_YEAST7.912e-1144.19Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
FTSH_TREPA7.912e-1139.60Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH_MEDSA7.912e-1137.98Cell division protease ftsH homolog, chloroplastic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659568 ID=EY659568; Name=EY659568; organism=Citrus sinensis; type=EST; length=938bp
CTATGCTTTTTATGAAGAATGAATTCATGGTTAACCGGGATGGTTTGCGC
ACATAAGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGC
TGATGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCAC
ATTGTCCCATACGGGAAATTTTGGAGAATGAAAAGAACGACAGAGCTTTA
GCATTGGCCGAGAATAGAGCTTCACCTTCATTGTACAGCAGCGTCGACGT
TCGCCCTCTGATTATGGACGATTTCAAATATGCACATGAGCAGGTGTGTG
CAATTGTATCATCAGAGTCTACAAATATGAATGATCTCCCTTCAATGGAA
TGAACTATACTGAGAAGGTGGATCGAAGAAAAAGAAATCTCTGAGCTACT
TTATGCAAAGGGGGATTCTTTTTGAATACCATTCTTGGGTGGGTCATTCC
CCTCTTCATCCTATATGGTGCCAAGATCACGGACCTGTATTTATGGAAAA
TTCTGGAGGGCCGTCCCCTTTTACTTGGAAAAATATACGCTTTTGAACCT
CTTCCCCTTTGGTTAGAAATTCTTTTGTTATATTCTTAACAAGGGTAACT
TAACTCAAATAGGCATTTCCCCTTCCATAAACCGCGACTTTGTTTTTTTG
GCCCTCCAGATGCGTAATAACATTGTGTTAAATCTTGCGAAATATAAGAA
AACAATAATAAACAGGGCCGCCGCTCAGAGGATCAACGTTCCCNACCGGC
TAGCCACGCTTTCTCTTCTTTGTGCCCCCAAATTCATC
back to top