EY659568

Overview
NameEY659568
Unique NameEY659568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.316e-17
Identity = 49/113 (43.36%), Postives = 68/113 (60.18%), Query Frame = 3
Query:    3 MLFMKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKND 341
            M  +K EFM   DGL +  + RVLVL ATNRP D+DEA+ RR+P+   + LP+A  R KI+ + L K  L ++ D  G+ N   G SGS +K +C +A   P RE+ +   ND
Sbjct:  208 MAQIKAEFMSMWDGLLS-GQSRVLVLGATNRPADIDEAIRRRMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSALSVPRRELFDKHGND 319          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.316e-17
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   12 MKNEFMVNRDGL-----RT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSS 464
            MK E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L  IA   +GYSG+D+ N+C  A+   +R  +E    +    L+               P  M+DF+ A +++   VS+
Sbjct:  329 MKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREAMH---------MPTTMEDFEMALKKISKSVSA 475          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.316e-17
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 320
            +K EF+V  DG  T   +R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  ++AKE  + ++ ++E I   ADG+SG+D+  LC  AA  PIR I
Sbjct:  502 IKTEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGADMTQLCREAALGPIRSI 605          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.331e-17
Identity = 54/157 (34.39%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNM 479
            +K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   +D + E +   +DG+SG+D+  LC  A+  PIR +              + A  +  S   VRP+   DF+ A   V   VS +   +
Sbjct:  523 IKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIRSL--------------HTADIATISPDQVRPIAYIDFENAFRTVRPSVSPKDLEL 665          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.657e-17
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   12 MKNEFMVNRDGL-----RT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSS 464
            +K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L  IA   +GYSG+D+ N+C  A+   +R  +E    +    L+               P  M+DF+ A ++V   VS+
Sbjct:  329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREEMH---------MPTTMEDFEMALKKVSKSVSA 475          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.657e-17
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR-VILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 320
            +K EF+V  DG+ T   ER+LVL ATNRP +LDEA  RR  +RL + LP+  +R +I++ +++      ++ +LE I  + DGYSG+D++ LC  AA  PIR+I
Sbjct:  435 IKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQIVQNLLVGTRHDITNHNLERIRELTDGYSGADMRQLCTEAAMGPIRDI 538          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.388e-17
Identity = 55/164 (33.54%), Postives = 91/164 (55.49%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*------DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMND 485
            +K+E +V  DG+          ++ V+VLAATN P+D+DEA+ RRL +R+ + LPD  +R+ +I + L   E+ASDV++E +A   +GYSG DL N+C  A+   +R  +  +  D    ++++  S          P+ M DF+ A  +V   VSS     ++
Sbjct:  359 VKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISND--------PVAMCDFEEAIRKVQPSVSSSDIEKHE 514          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.649e-17
Identity = 51/156 (32.69%), Postives = 90/156 (57.69%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKER-----VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSS 464
            +K+E +V  DG+    +       V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + ++ASDVDL   A   +GYSG+D+ N+C  A+   +R  ++    +   AL+++             P+ M+DF+ A +++   VS+
Sbjct:  326 VKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEEIRALSKDELQ---------MPVTMEDFELALKKISKSVSA 472          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.646e-16
Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRA 371
            +K EF+V  DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  PIRE+  N +  + L ++  RA
Sbjct:  602 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL--NVEQVKCLDISAMRA 721          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.646e-16
Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRA 371
            +K EF+V  DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  PIRE+  N +  + L ++  RA
Sbjct:  602 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL--NVEQVKCLDISAMRA 721          
The following BLAST results are available for this feature:
BLAST of EY659568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
YJNA_SCHPO3.316e-1743.36Uncharacterized AAA domain-containing protein C24B... [more]
KTNA1_MOUSE3.316e-1735.26Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
FIGL1_XENTR3.316e-1745.19Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
FIGL1_RAT4.331e-1734.39Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
KTNA1_RAT5.657e-1735.26Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
FIGL1_CAEEL5.657e-1744.23Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
KTNA1_ARATH7.388e-1733.54Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
KATL1_DANRE9.649e-1732.69Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
SPAST_DROYA1.646e-1644.26Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROSE1.646e-1644.26Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659568 ID=EY659568; Name=EY659568; organism=Citrus sinensis; type=EST; length=938bp
CTATGCTTTTTATGAAGAATGAATTCATGGTTAACCGGGATGGTTTGCGC
ACATAAGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGC
TGATGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCAC
ATTGTCCCATACGGGAAATTTTGGAGAATGAAAAGAACGACAGAGCTTTA
GCATTGGCCGAGAATAGAGCTTCACCTTCATTGTACAGCAGCGTCGACGT
TCGCCCTCTGATTATGGACGATTTCAAATATGCACATGAGCAGGTGTGTG
CAATTGTATCATCAGAGTCTACAAATATGAATGATCTCCCTTCAATGGAA
TGAACTATACTGAGAAGGTGGATCGAAGAAAAAGAAATCTCTGAGCTACT
TTATGCAAAGGGGGATTCTTTTTGAATACCATTCTTGGGTGGGTCATTCC
CCTCTTCATCCTATATGGTGCCAAGATCACGGACCTGTATTTATGGAAAA
TTCTGGAGGGCCGTCCCCTTTTACTTGGAAAAATATACGCTTTTGAACCT
CTTCCCCTTTGGTTAGAAATTCTTTTGTTATATTCTTAACAAGGGTAACT
TAACTCAAATAGGCATTTCCCCTTCCATAAACCGCGACTTTGTTTTTTTG
GCCCTCCAGATGCGTAATAACATTGTGTTAAATCTTGCGAAATATAAGAA
AACAATAATAAACAGGGCCGCCGCTCAGAGGATCAACGTTCCCNACCGGC
TAGCCACGCTTTCTCTTCTTTGTGCCCCCAAATTCATC
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