EY659568

Overview
NameEY659568
Unique NameEY659568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.646e-16
Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRA 371
            +K EF+V  DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  PIRE+  N +  + L ++  RA
Sbjct:  602 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL--NVEQVKCLDISAMRA 721          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.646e-16
Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRA 371
            +K EF+V  DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  PIRE+  N +  + L ++  RA
Sbjct:  602 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL--NVEQVKCLDISAMRA 721          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.646e-16
Identity = 53/157 (33.76%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNM 479
            +K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   S+ ++E I   +D +SG+D+  LC  A+  PIR +                A  +  +   VRP+   DF+ A   V   VS +   +
Sbjct:  520 IKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL--------------QTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLEL 662          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.150e-16
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPIREI 320
            +K EF+V  DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D L  ++ + DGYSGSDL  L   AA  PIRE+
Sbjct:  632 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIREL 736          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.150e-16
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPIREI 320
            +K EF+V  DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D L  ++ + DGYSGSDL  L   AA  PIRE+
Sbjct:  632 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIREL 736          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.807e-16
Identity = 58/157 (36.94%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTN 476
            +K EF+V  DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + +GYSGSDL  L   AA  PIRE+  N +  + L ++             +RP+   DF  + +++   V+ +S N
Sbjct:  621 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITEGYSGSDLTALAKDAALEPIREL--NVEQVKCLDISA------------MRPITEKDFHNSLKRIRRSVAPQSLN 763          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.667e-16
Identity = 52/123 (42.28%), Postives = 76/123 (61.79%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL-ENEKNDRALALAENRAS 374
            +K EF++  DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M DGYSGSDL  L   AA  PIRE+  E  KN  A  +   R S
Sbjct:  426 LKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLS 548          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.667e-16
Identity = 52/123 (42.28%), Postives = 76/123 (61.79%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL-ENEKNDRALALAENRAS 374
            +K EF++  DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M DGYSGSDL  L   AA  PIRE+  E  KN  A  +   R S
Sbjct:  459 LKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLS 581          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.667e-16
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPIREI 320
            +K EF+V  DGL T  +ERVLV+ ATNRP +LD+A +RR  +R+ V LPD   R  ++  +L K       D L+ +A + +GYSGSDL  L   AA  PIRE+
Sbjct:  493 LKTEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALRRFTKRVYVTLPDHNTRVILLEKLLKKHNNPLSADKLKYLARLTEGYSGSDLTALAKDAALGPIREL 596          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.667e-16
Identity = 52/123 (42.28%), Postives = 76/123 (61.79%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL-ENEKNDRALALAENRAS 374
            +K EF++  DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M DGYSGSDL  L   AA  PIRE+  E  KN  A  +   R S
Sbjct:  461 LKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLS 583          
The following BLAST results are available for this feature:
BLAST of EY659568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
SPAST_DROME1.646e-1644.26Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROER1.646e-1644.26Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
FIGL1_HUMAN1.646e-1633.76Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
SPAST_DROPS2.150e-1647.62Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_DROPE2.150e-1647.62Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
SPAST_DROWI2.807e-1636.94Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
SPAST_RAT3.667e-1642.28Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_MOUSE3.667e-1642.28Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_IXOSC3.667e-1646.15Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]
SPAST_HUMAN3.667e-1642.28Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659568 ID=EY659568; Name=EY659568; organism=Citrus sinensis; type=EST; length=938bp
CTATGCTTTTTATGAAGAATGAATTCATGGTTAACCGGGATGGTTTGCGC
ACATAAGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGC
TGATGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCAC
ATTGTCCCATACGGGAAATTTTGGAGAATGAAAAGAACGACAGAGCTTTA
GCATTGGCCGAGAATAGAGCTTCACCTTCATTGTACAGCAGCGTCGACGT
TCGCCCTCTGATTATGGACGATTTCAAATATGCACATGAGCAGGTGTGTG
CAATTGTATCATCAGAGTCTACAAATATGAATGATCTCCCTTCAATGGAA
TGAACTATACTGAGAAGGTGGATCGAAGAAAAAGAAATCTCTGAGCTACT
TTATGCAAAGGGGGATTCTTTTTGAATACCATTCTTGGGTGGGTCATTCC
CCTCTTCATCCTATATGGTGCCAAGATCACGGACCTGTATTTATGGAAAA
TTCTGGAGGGCCGTCCCCTTTTACTTGGAAAAATATACGCTTTTGAACCT
CTTCCCCTTTGGTTAGAAATTCTTTTGTTATATTCTTAACAAGGGTAACT
TAACTCAAATAGGCATTTCCCCTTCCATAAACCGCGACTTTGTTTTTTTG
GCCCTCCAGATGCGTAATAACATTGTGTTAAATCTTGCGAAATATAAGAA
AACAATAATAAACAGGGCCGCCGCTCAGAGGATCAACGTTCCCNACCGGC
TAGCCACGCTTTCTCTTCTTTGTGCCCCCAAATTCATC
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