EY659568

Overview
NameEY659568
Unique NameEY659568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.667e-16
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEG-IANMADGYSGSDLKNLCVTAAHCPIREI 320
            +K EF+V  DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D  G +A + +GYSGSDL  L   AA  PIRE+
Sbjct:  626 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPIREL 730          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.667e-16
Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRA 371
            +K EF+V  DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A   DGYSGSDL  L   AA  PIRE+  N +  + L ++  RA
Sbjct:  614 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEPIREL--NVEQVKCLDISAMRA 733          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.667e-16
Identity = 43/110 (39.09%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-----T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 326
            +K+E ++  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP+   RE+++R+ L +  LA D+DL+ IA   DGYSG+D+ N+C  A+   +R  ++
Sbjct:  354 VKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDASMMAMRRRIQ 463          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.254e-16
Identity = 59/159 (37.11%), Postives = 91/159 (57.23%), Query Frame = 3
Query:   12 MKNEFMVNRDGLR-T*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA---DGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTN 476
            +K EF+V  DGL    + +R++VLAATNRP +LDEA +RR  +R+ V+LP+   RE ++  +L K+   S +D E +A +A   DGYSGSDL  L   AA  PIRE+  N +  + L ++             +RP+   DF  + +++   V+ +S N
Sbjct:  609 LKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPEVQTRELLLSRLLQKQ--GSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIREL--NVEQVKCLDISA------------MRPITEKDFHNSLKRIRRSVAPQSLN 751          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.254e-16
Identity = 57/177 (32.20%), Postives = 95/177 (53.67%), Query Frame = 3
Query:   12 MKNEFMVNRDGL----RT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME*TILRRWIEE 530
            +K E +V  DG+         + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R  ++++ L + +LA+DV+++ IA   +GYSG+D+ N+C  A+   +R  +E    +    L ++             P  M+DF+ A ++V     S+S +  DL   E     +WI E
Sbjct:  324 VKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLPKDEMH---------MPTTMEDFETALKKV-----SKSVSAADLEKYE-----KWIAE 481          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 8.169e-16
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL-ENEKNDRALALAENRAS 374
            +K EF++  DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A + DGYSGSDL  L   AA  PIRE+  E  KN  A  +   R S
Sbjct:  458 LKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARLTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLS 580          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.169e-16
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL-ENEKNDRALALAENRAS 374
            +K EF++  DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M +GYSGSDL  L   AA  PIRE+  E  KN  A  +   R S
Sbjct:  459 LKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLS 581          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 8.169e-16
Identity = 54/139 (38.85%), Postives = 81/139 (58.27%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDF 425
            +K EFM   DGL   +  RV+++ ATNR  D+D+A +RRLP+R +V+LP +  R KI+ V+L   +L  D  DL+ IA+   G+SGSDLK LC  AA    +E ++ ++      +       +  SS+ +RPL   DF
Sbjct:  212 LKAEFMTLWDGLL--NNGRVMIIGATNRINDIDDAFLRRLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAKEYIKQKRQ----LIDSGTIDVNDTSSLKIRPLKTKDF 344          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.067e-15
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR-VILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 320
            +K E +V  DG RT   ERVLV+ ATNRP DLD+A +RRL +R+ V LP+   R +II+ +++ +    +   +  +A +  GYSG DL  LC  AA+ PIR +
Sbjct:  503 LKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALRRLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQQINSLAEVTQGYSGFDLAALCKDAAYEPIRRL 606          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.067e-15
Identity = 44/104 (42.31%), Postives = 71/104 (68.27%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 320
            +K EF++  DG+++  ++R+LV+ ATNRP +LD+AV+RR  +R+ V+LP+   R  +++ +L+K+    +  +L  +A M DGYSGSDL  L   AA  PIRE+
Sbjct:  458 LKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKELAQLARMTDGYSGSDLTALVKDAALGPIREL 561          
The following BLAST results are available for this feature:
BLAST of EY659568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
SPAST_DROGR3.667e-1647.62Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_DROAN3.667e-1644.26Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
KTNA1_STRPU3.667e-1639.09Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
SPAST_DROMO6.254e-1637.11Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
KTNA1_DANRE6.254e-1632.20Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
SPAST_PIG8.169e-1641.46Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_BOVIN8.169e-1641.46Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
MSP1_YEAST8.169e-1638.85Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
SPAST_DICDI1.067e-1543.27Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
SPAST_CHICK1.067e-1542.31Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659568 ID=EY659568; Name=EY659568; organism=Citrus sinensis; type=EST; length=938bp
CTATGCTTTTTATGAAGAATGAATTCATGGTTAACCGGGATGGTTTGCGC
ACATAAGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGC
TGATGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCAC
ATTGTCCCATACGGGAAATTTTGGAGAATGAAAAGAACGACAGAGCTTTA
GCATTGGCCGAGAATAGAGCTTCACCTTCATTGTACAGCAGCGTCGACGT
TCGCCCTCTGATTATGGACGATTTCAAATATGCACATGAGCAGGTGTGTG
CAATTGTATCATCAGAGTCTACAAATATGAATGATCTCCCTTCAATGGAA
TGAACTATACTGAGAAGGTGGATCGAAGAAAAAGAAATCTCTGAGCTACT
TTATGCAAAGGGGGATTCTTTTTGAATACCATTCTTGGGTGGGTCATTCC
CCTCTTCATCCTATATGGTGCCAAGATCACGGACCTGTATTTATGGAAAA
TTCTGGAGGGCCGTCCCCTTTTACTTGGAAAAATATACGCTTTTGAACCT
CTTCCCCTTTGGTTAGAAATTCTTTTGTTATATTCTTAACAAGGGTAACT
TAACTCAAATAGGCATTTCCCCTTCCATAAACCGCGACTTTGTTTTTTTG
GCCCTCCAGATGCGTAATAACATTGTGTTAAATCTTGCGAAATATAAGAA
AACAATAATAAACAGGGCCGCCGCTCAGAGGATCAACGTTCCCNACCGGC
TAGCCACGCTTTCTCTTCTTTGTGCCCCCAAATTCATC
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