EY659568

Overview
NameEY659568
Unique NameEY659568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15
Identity = 44/119 (36.97%), Postives = 75/119 (63.03%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAEN 365
            +K EF++  DG+++   +RVLV+ ATNRP +LD+AV+RR  +R+ V LP+   R  +++ +L+K+    S+ +L  ++ + +GYSGSD+  L   AA  PIRE+   +  + A +   N
Sbjct:  445 LKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKNMAASEMRN 563          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15
Identity = 50/156 (32.05%), Postives = 85/156 (54.49%), Query Frame = 3
Query:   12 MKNEFMVNRDG----LRT*DKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSS 464
            +K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+   +R  +     +   AL++              P+   D + A +++   VS+
Sbjct:  326 VKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMRRRINGLSPEEIRALSKEELQ---------MPVTRGDLELALKKIAKSVSA 472          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.915e-15
Identity = 53/164 (32.32%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENE-KNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME 500
            N+ +   DG+ T  K+ V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  +A DVDLE +A M +G+SG+DL  +C  A    IRE +E+E + +R     E + +PS     +  P  + + +  H +     +  S + ND+   E
Sbjct:  602 NQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRER-----ERQTNPSAMEVEEDDP--VPEIRRDHFEEAMRFARRSVSDNDIRKYE 756          

HSP 2 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQ 443
            ++ +   DGL+   +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA   IR+ ++       + L +      + +S+ V    MDDF++A  Q
Sbjct:  326 SQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD------LIDLEDETIDAEVMNSLAV---TMDDFRWALSQ 458          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 81.6481 bits (200), Expect = 6.915e-15
Identity = 53/164 (32.32%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENE-KNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME 500
            N+ +   DG+ T  K+ V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  +A DVDLE +A M +G+SG+DL  +C  A    IRE +E+E + +R     E + +PS     +  P  + + +  H +     +  S + ND+   E
Sbjct:  602 NQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRER-----ERQTNPSAMEVEEDDP--VPEIRRDHFEEAMRFARRSVSDNDIRKYE 756          

HSP 2 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQ 443
            ++ +   DGL+   +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA   IR+ ++       + L +      + +S+ V    MDDF++A  Q
Sbjct:  326 SQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD------LIDLEDETIDAEVMNSLAV---TMDDFRWALSQ 458          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 6.915e-15
Identity = 53/164 (32.32%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENE-KNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME 500
            N+ +   DG+ T  K+ V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  +A DVDLE +A M +G+SG+DL  +C  A    IRE +E+E + +R     E + +PS     +  P  + + +  H +     +  S + ND+   E
Sbjct:  602 NQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRER-----ERQTNPSAMEVEEDDP--VPEIRRDHFEEAMRFARRSVSDNDIRKYE 756          

HSP 2 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQ 443
            ++ +   DGL+   +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA   IR+ ++       + L +      + +S+ V    MDDF++A  Q
Sbjct:  326 SQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD------LIDLEDETIDAEVMNSLAV---TMDDFRWALSQ 458          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 6.915e-15
Identity = 53/164 (32.32%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENE-KNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME 500
            N+ +   DG+ T  K+ V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  +A DVDLE +A M +G+SG+DL  +C  A    IRE +E+E + +R     E + +PS     +  P  + + +  H +     +  S + ND+   E
Sbjct:  602 NQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRER-----ERQTNPSAMEVEEDDP--VPEIRRDHFEEAMRFARRSVSDNDIRKYE 756          

HSP 2 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQ 443
            ++ +   DGL+   +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA   IR+ ++       + L +      + +S+ V    MDDF++A  Q
Sbjct:  326 SQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD------LIDLEDETIDAEVMNSLAV---TMDDFRWALSQ 458          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.915e-15
Identity = 53/164 (32.32%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENE-KNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME 500
            N+ +   DG+ T  K+ V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  +A DVDLE +A M +G+SG+DL  +C  A    IRE +E+E + +R     E + +PS     +  P  + + +  H +     +  S + ND+   E
Sbjct:  602 NQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRER-----ERQTNPSAMEVEEDDP--VPEIRRDHFEEAMRFARRSVSDNDIRKYE 756          

HSP 2 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQ 443
            ++ +   DGL+   +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA   IR+ ++       + L +      + +S+ V    MDDF++A  Q
Sbjct:  326 SQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD------LIDLEDETIDAEVMNSLAV---TMDDFRWALSQ 458          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.915e-15
Identity = 51/155 (32.90%), Postives = 83/155 (53.55%), Query Frame = 3
Query:   12 MKNEFMVNRDG----LRT*DKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVS 461
            +K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R  ++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+   +R  +     +   AL++              P+   DF  A +++   VS
Sbjct:  328 VKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRTDLLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQ---------MPVTKGDFDLALKKIAKSVS 473          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.628e-14
Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENE-KNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME 500
            N+ +   DG+ +  K+ V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  ++ DVDL+ +A M +G+SG+DL  +C  A    IRE +ENE + +R     E + +PS     +  P  + + +  H +     +  S + ND+   E
Sbjct:  602 NQILTEMDGMSS--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRER-----ERQTNPSAMEVEEDDP--VPEIRKDHFEEAMRFARRSVSDNDIRKYE 756          

HSP 2 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQ 443
            ++ +   DGL+   +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA   IR+ ++       + L +      + +S+ V    MDDF++A  Q
Sbjct:  326 SQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD------LIDLEDETIDAEVMNSLAV---TMDDFRWALSQ 458          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.854e-14
Identity = 57/164 (34.76%), Postives = 85/164 (51.83%), Query Frame = 3
Query:   18 NEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQV-CAIVSSESTNMNDLPSME 500
            N+ +   DGL   + E V+V+AATNRP  +D A++R  R  R + V  P    RE+I+++      LA+DV L  +A  ADGY GSDL N+   AA     E L ++++   + +A  RA+       +VRP I DD    ++QV      S+  N+N     E
Sbjct:  585 NQLLTELDGLE--EMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELAERADGYVGSDLANIAREAA----IEALRDDEDADDVGMAHFRAAME-----NVRPTITDDLMEYYDQVEDQFKGSQGPNVNSRQGSE 737          
The following BLAST results are available for this feature:
BLAST of EY659568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
SPAST_XENLA5.295e-1536.97Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
KATL1_RAT5.295e-1532.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
TERA_RAT6.915e-1532.32Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_PIG6.915e-1532.32Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_MOUSE6.915e-1532.32Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN6.915e-1532.32Transitional endoplasmic reticulum ATPase OS=Homo ... [more]
TERA_BOVIN6.915e-1532.32Transitional endoplasmic reticulum ATPase OS=Bos t... [more]
KATL1_SORAR6.915e-1532.90Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
TERA_DANRE2.628e-1431.10Transitional endoplasmic reticulum ATPase OS=Danio... [more]
CDCH_HALSA5.854e-1434.76Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659568 ID=EY659568; Name=EY659568; organism=Citrus sinensis; type=EST; length=938bp
CTATGCTTTTTATGAAGAATGAATTCATGGTTAACCGGGATGGTTTGCGC
ACATAAGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGC
TGATGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCAC
ATTGTCCCATACGGGAAATTTTGGAGAATGAAAAGAACGACAGAGCTTTA
GCATTGGCCGAGAATAGAGCTTCACCTTCATTGTACAGCAGCGTCGACGT
TCGCCCTCTGATTATGGACGATTTCAAATATGCACATGAGCAGGTGTGTG
CAATTGTATCATCAGAGTCTACAAATATGAATGATCTCCCTTCAATGGAA
TGAACTATACTGAGAAGGTGGATCGAAGAAAAAGAAATCTCTGAGCTACT
TTATGCAAAGGGGGATTCTTTTTGAATACCATTCTTGGGTGGGTCATTCC
CCTCTTCATCCTATATGGTGCCAAGATCACGGACCTGTATTTATGGAAAA
TTCTGGAGGGCCGTCCCCTTTTACTTGGAAAAATATACGCTTTTGAACCT
CTTCCCCTTTGGTTAGAAATTCTTTTGTTATATTCTTAACAAGGGTAACT
TAACTCAAATAGGCATTTCCCCTTCCATAAACCGCGACTTTGTTTTTTTG
GCCCTCCAGATGCGTAATAACATTGTGTTAAATCTTGCGAAATATAAGAA
AACAATAATAAACAGGGCCGCCGCTCAGAGGATCAACGTTCCCNACCGGC
TAGCCACGCTTTCTCTTCTTTGTGCCCCCAAATTCATC
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