EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_METS4 (Elongation factor Ts OS=Methylobacterium sp. (strain 4-46) GN=tsf PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.143e-25
Identity = 78/213 (36.62%), Postives = 115/213 (53.99%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ-YXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL +   DIEAA+  LRK+G   A+KK+ R A EGL+A+      AA++E+N ETDFV+RN+ FQ +             NV    +  FP                  G +TTV++ + E+ A +GEN+ LRR   L A S  V++TY+H     GLG+I  L++LE    + + + L  +G ++ MH+ A  P
Sbjct:    8 MVKDLREKTGAGMMDCKSALNETAGDIEAAVDWLRKKGLAKAAKKAGRVAAEGLVAVESAGRHAALVEVNSETDFVARNDGFQAFVREAAKVALNSQGNVESLEAAHFP------------------GSQTTVKDRLQELIATIGENMTLRRVATL-AVSQGVIATYVHGQVSEGLGKIGVLVALE---SAGNVEFLSTLGRQIAMHVAATNP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHOPT (Elongation factor Ts OS=Rhodopseudomonas palustris (strain TIE-1) GN=tsf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.950e-25
Identity = 81/222 (36.49%), Postives = 115/222 (51.80%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIG----GETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    ++K+LRE T   M D K AL + D +I+AA+  LRK+G   A+KK+ R A EGL+    + +K  VIE+N ETDFV+RNE FQ                     GL  +  +    LK+  D   I     G TTV  AI +  A +GEN+ LRR   LS S   VV++Y+H +   G G++  +++LE    +   D L  +G +L MH+ A  P
Sbjct:    2 ATITAAMVKELRETTGVGMMDCKQALAETDGNIDAAIDWLRKKGLSKAAKKAGRVAAEGLIGALTDGTKGVVIEVNSETDFVARNEQFQ---------------------GLVKMIAQV--ALKVGADLDAINAAPVGSTTVAGAIADAIATIGENMTLRRAAALSVSQ-GVVASYIHNAVIDGAGKMGVIVALE---SAGKADELAVLGRQLAMHVAAANP 196          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHOPA (Elongation factor Ts OS=Rhodopseudomonas palustris GN=tsf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.950e-25
Identity = 81/222 (36.49%), Postives = 115/222 (51.80%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIG----GETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    ++K+LRE T   M D K AL + D +I+AA+  LRK+G   A+KK+ R A EGL+    + +K  VIE+N ETDFV+RNE FQ                     GL  +  +    LK+  D   I     G TTV  AI +  A +GEN+ LRR   LS S   VV++Y+H +   G G++  +++LE    +   D L  +G +L MH+ A  P
Sbjct:    2 ATITAAMVKELRETTGVGMMDCKQALAETDGNIDAAIDWLRKKGLSKAAKKAGRVAAEGLIGALTDGTKGVVIEVNSETDFVARNEQFQ---------------------GLVKMIAQV--ALKVGADLDAINAAPVGSTTVAGAIADAIATIGENMTLRRAAALSVSQ-GVVASYIHNAVIDGAGKMGVIVALE---SAGKADELAVLGRQLAMHVAAANP 196          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BARBK (Elongation factor Ts OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tsf PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.326e-25
Identity = 76/213 (35.68%), Postives = 109/213 (51.17%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXE-NVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLE-VGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K+LRE + A M D K AL++ + DIE A+  LRK+G   A KK+ RTA EGL+ +A     A V+E+N ETDFV+RN+ FQ             E +V    + ++P                  G E TV+ AI +    +GEN+  RR   LS  +   V+TY+H S   GLG++  L+ +E  GD   + D  ++V     MHI A  P
Sbjct:    8 VKELRELSGAGMMDCKAALMETNGDIETAVDWLRKKGMAKADKKAGRTAAEGLIGIASKGLSAVVVEVNSETDFVARNDAFQTIVRNVATAALDTEGSVESVSASIYP------------------GSEKTVEEAIKDAIGTIGENMAFRRSAKLSVQN-GAVATYIHNSVADGLGKLGVLVGIETTGDKEVAVDFARKV----AMHIAATNP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHIE6 (Elongation factor Ts OS=Rhizobium etli (strain CIAT 652) GN=tsf PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.343e-25
Identity = 77/212 (36.32%), Postives = 112/212 (52.83%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ ++   +KA V+E+N ETDFV+RN+ FQ               VS  GS        Y          P  G   +V + I +  A +GEN+ LRR   LS     VV+TY+H +   GLG++  L++L+    +   + L  +G ++ MHI A  P
Sbjct:    8 MVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVSSEGTKAVVVEVNSETDFVARNDAFQ-----DLVRGIAKVAVSTNGSVEAVAAATY----------PASG--KSVSDTIKDAIATIGENMNLRRSVALSVED-GVVATYIHNAVSDGLGKLGVLVALK---STGDKEALNAIGRQVAMHIAATAP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_XANP2 (Elongation factor Ts OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=tsf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.673e-25
Identity = 77/213 (36.15%), Postives = 111/213 (52.11%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ-YXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LR++T A M D K AL + + DIEAA+  LRK+G   A+KK+ R A EGL+A+  +   AA IE+N ETDFV+RN  FQ +              V    +  FP                  G   TV   +T + A +GEN+ LRR   LS S+  V+++Y+H +   G GRI  L++LE    +   + L  +G ++ MHI A  P
Sbjct:    8 LVKELRDKTGAGMMDCKSALTETNGDIEAAIDWLRKKGLAKAAKKAGRVAAEGLVAVESSGHYAAAIEVNAETDFVARNPDFQAFVREAAKVALNTDGTVEAVAAAKFP------------------GESVTVAERLTALIATIGENMTLRRSAKLSVSA-GVIASYVHGAVVEGQGRIGVLVALE---STGDVEKLSTLGRQIAMHIAALNP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BARQU (Elongation factor Ts OS=Bartonella quintana GN=tsf PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.673e-25
Identity = 71/212 (33.49%), Postives = 110/212 (51.89%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXE-NVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K+LRE + A M D K AL D + D+EAA+  LRK+G   A KK+ RTA EGL+ +   ++ A ++E+N ETDFV+RN++FQ             + NV    +  +P                  G E TV+  I +  + +GEN+  RR   LS     VV+TY+H+    GLG++  L+++E    + + +     G ++ MHI A  P
Sbjct:    8 VKELRELSGAGMMDCKAALADTNGDMEAAVDWLRKKGIAKADKKAGRTAAEGLIGIVSKDTSAVLVEINSETDFVARNDLFQDIVRNVATAALDTQGNVESVSASFYP------------------GSEKTVEATIKDAISTIGENMTFRRSAKLSVKD-GVVATYIHSKVAEGLGKLGVLVAVET---TGNKEAAAVFGRQVAMHIAATNP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHOP2 (Elongation factor Ts OS=Rhodopseudomonas palustris (strain HaA2) GN=tsf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.409e-25
Identity = 80/222 (36.04%), Postives = 116/222 (52.25%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIG----GETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    ++K+LRE T   M D K AL + D ++EAA+  LRK+G   A+KK+ R A EGL+    + +K  VIE+N ETDFV+RNE FQ                     GL  +  +    LK+  D  KI     G +TV  AI++  A +GEN+ LRR   L  S   VV++Y+H +   G G++  +++LE    +   D L  +G +L MH+ A  P
Sbjct:    2 ATITAAMVKELRETTGVGMMDCKQALAENDGNMEAAVDWLRKKGLSKAAKKAGRVAAEGLIGALTDGTKGVVIEVNSETDFVARNEQFQ---------------------GLVKMIAQV--ALKVGADVDKINAAPVGSSTVAGAISDAIATIGENMTLRRAAALEVSQ-GVVASYVHGAVIEGAGKMGVIVALE---STGKTDELAALGRQLAMHVAAANP 196          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHISN (Elongation factor Ts OS=Rhizobium sp. (strain NGR234) GN=tsf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.676e-25
Identity = 71/212 (33.49%), Postives = 113/212 (53.30%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ +A   +KA V+E+N ETDFV+RN+ FQ                   G     +G +          +P  G   +V++++ +  A +GEN+ LRR   L      VV+TY+H +   G+G++  L++L+    + + + L  +G ++ MH+ A  P
Sbjct:    7 MVKDLREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGIASAGNKAVVVEINSETDFVARNDAFQDLVR---------------GIANVALGTDGTVEAVSQATYPATG--KSVEDSVKDAIATIGENMTLRRAAALKVED-GVVATYIHNAAGDGIGKLGVLVALK---STGNKEALNAIGRQVAMHVAATNP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHILW (Elongation factor Ts OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=tsf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.676e-25
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K AL +   D+EAA+  LR +G   A KKS RTA EGL+ ++   +KA V+E+N ETDFV+RN+ FQ               VS  GS        Y          P  G   +V + I +  A +GEN+ LRR   LS     VV+TY+H +   GLG++  L++L+    +   + L  +G ++ MHI A  P
Sbjct:    8 MVKELREKTGAGMMDCKKALAETGGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVSSQGTKAVVVEVNSETDFVARNDAFQ-----DLVRGIAKVAVSTNGSVDAVAAATY----------PASG--KSVSDTIKDAIATIGENMNLRRSVALSVED-GVVATYIHNAVSDGLGKLGVLVALK---STGDKEALNAIGRQVAMHIAATAP 198          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_METS41.143e-2536.62Elongation factor Ts OS=Methylobacterium sp. (stra... [more]
EFTS_RHOPT1.950e-2536.49Elongation factor Ts OS=Rhodopseudomonas palustris... [more]
EFTS_RHOPA1.950e-2536.49Elongation factor Ts OS=Rhodopseudomonas palustris... [more]
EFTS_BARBK3.326e-2535.68Elongation factor Ts OS=Bartonella bacilliformis (... [more]
EFTS_RHIE64.343e-2536.32Elongation factor Ts OS=Rhizobium etli (strain CIA... [more]
EFTS_XANP25.673e-2536.15Elongation factor Ts OS=Xanthobacter autotrophicus... [more]
EFTS_BARQU5.673e-2533.49Elongation factor Ts OS=Bartonella quintana GN=tsf... [more]
EFTS_RHOP27.409e-2536.04Elongation factor Ts OS=Rhodopseudomonas palustris... [more]
EFTS_RHISN9.676e-2533.49Elongation factor Ts OS=Rhizobium sp. (strain NGR2... [more]
EFTS_RHILW9.676e-2536.32Elongation factor Ts OS=Rhizobium leguminosarum bv... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
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