EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CLOB6 (Elongation factor Ts OS=Clostridium botulinum (strain 657 / Type Ba4) GN=tsf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.490e-21
Identity = 72/214 (33.64%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL +CD D+E A++ LR++G   A+KKS R A EG+++  ++++    ++IE NCETDFVS NE+F               N+S+  +       E L   K   D  K+     V++ ITE+ A +GEN+ LRR   LS     V+++Y+H     G GRI  ++ L      +    L  +  ++ M + A  P
Sbjct:    6 MVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIIEFNCETDFVSVNELF----------VELANNLSKQAAFSNVSTAEELLEEKYIADESKL-----VKDVITELIAKLGENMNLRRIAKLSVDK-GVITSYIH-----GGGRIGVIVKLACEKEDAK---LAEIAKDVAMQVAATNP 195          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_JANSC (Elongation factor Ts OS=Jannaschia sp. (strain CCS1) GN=tsf PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.477e-21
Identity = 71/213 (33.33%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++K+LR+ T A M D K AL + D D++AA+  LR +G   A+KKS RTA EGL+A+A + S    +E+N ETDFV +N  FQ             E V+  G     +G +  E L L  D   +GG+ +V + +T   A +GEN+ +RR   ++    ++V +Y+H +   G+G+I  L++ + GD             ++ MH+ A  P
Sbjct:    6 SMVKELRDTTGAGMMDAKKALTETDGDMDAAVDWLRTKGLAKAAKKSGRTAAEGLVAVAVSGSTGVAVEVNSETDFVGKNAEFQ-------------EMVA--GIAQVALGADDTEAL-LAAD---MGGK-SVADTVTAKVATIGENMGVRR---MAKLEGDIVVSYVHNAAADGMGKIGVLIATKGGDAG--------FAKQVAMHVAAVNP 187          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_EXIS2 (Elongation factor Ts OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=tsf PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.107e-20
Identity = 72/212 (33.96%), Postives = 107/212 (50.47%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K ALV+ D D+ AA+  LR++G   A+ K  R A EGL A+A N +KAA++E+N ETDFV++NE FQ               V      +   G E  E    +    +     T+   I+E A+ +GE + LRR  L +        +YLH       GRI    S+ V +G++     + V  ++ MHI A +P
Sbjct:    7 MVKELREKTGAGMLDCKKALVEADGDMNAAIDFLREKGIAKAAAKGDRIAAEGLTAVAVNGNKAALVEINSETDFVAKNERFQ-------------SLVQNIADAVLRNGSETAEAALAS----EYEAGKTIDTYISEEASTIGEKISLRRVALFTKEDNAAFGSYLHMG-----GRIG---SVVVVEGTTD----ETVAKDIAMHIAAARP 189          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BREBN (Elongation factor Ts OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=tsf PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.107e-20
Identity = 75/211 (35.55%), Postives = 104/211 (49.29%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K+LRE+T A M D K AL +   D+E A+  LR+RG   A+KKS R A EGL A A   + AAV+E+NCETDFV +N  FQ             +++++      P   E        L+ P  G   T+ + I E  A +GEN+  RR  L   +   V   YLH       GRI  L++LE   G+      + +  +LGMH  A  P
Sbjct:    8 VKELRERTGAGMMDCKRALEETAGDMEKAIDLLRERGVAKAAKKSGRIAAEGLTATAVAGNVAAVVEVNCETDFVGKNPEFQ----------TLVKDIAEHVVSQRPASVEEA------LEQPFKGAGETLGHVINEKIATIGENISFRRFALSEKTDNGVFGAYLHMG-----GRIGVLVTLE---GTQD----ETLARDLGMHAAASNP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBA (Elongation factor Ts OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tsf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.446e-20
Identity = 73/213 (34.27%), Postives = 108/213 (50.70%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K+LRE+T A M D K AL + D DIE A++ LR++G   A+KKS R A EGL+   +++++   A++ELNCETDFV+ NE F                       L  +           L + K   E T+Q A+T + A +GEN+ +RR F+  +    VV +Y+H     G GRI  L+ +     S +   ++ V  EL M I A  P
Sbjct:    7 VKELRERTGAGMMDCKKALTETDGDIEKAVEVLREKGLAAAAKKSGRVAAEGLVKTYISEDKKSGAIVELNCETDFVAANEDFIAF-----------------ADALAKIATSTSATTVEELVNEKFDAEATIQEALTGLIARLGENMTVRR-FVKFSVDNGVVKSYIH-----GGGRIGVLVEVACDVESPA---VEEVAKELCMQIAAANP 193          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_EXISA (Elongation factor Ts OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=tsf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.888e-20
Identity = 73/212 (34.43%), Postives = 106/212 (50.00%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K ALV+ D D++AA+  LR++G   A+ K  R A EGL A+A   +KA ++E+N ETDFV++NE FQ                S   +    +  EY  G              T++  I E A+ +GE + LRR  +L  +   V  TYLH       GRI    S+ V DG+S     + V  ++ MH+ A  P
Sbjct:    7 MVKELREKTGAGMLDCKKALVETDGDMQAAIDFLREKGIAKAAAKGDRIAAEGLTAVAVEGNKAVLVEINSETDFVAKNEKFQTLVNNVAKAVL----ASGATTAEAALAAEYEAG-------------KTLETYIQEEASTIGEKISLRRVAVLEKAEDAVFGTYLHMG-----GRIG---SVVVIDGTSD----ETVAKDVAMHVAAASP 189          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_GEOKA (Elongation factor Ts OS=Geobacillus kaustophilus GN=tsf PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.466e-20
Identity = 73/213 (34.27%), Postives = 110/213 (51.64%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYL-EGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K AL + + D+E A+  LR++G   A+KK+ R A EG+  +A   + A ++E+N ETDFV++NE FQ               V +  + L    P  L E L   +D+      +TVQ+ I E  A +GE + LRR  +++ +  E    YLH       GRI G+L+L  G+ S        V  ++ MHI A  P
Sbjct:    7 MVKELREKTGAGMMDCKKALTETNGDMEKAIDWLREKGIAKAAKKADRIAAEGMAYIAVEGNTAVILEVNSETDFVAKNEAFQTL-------------VKELAAHLLKQKPASLDEALGQTMDN-----GSTVQDYINEAIAKIGEKITLRRFAVVNKADGETFGAYLHMG-----GRI-GVLTLLAGNASED------VAKDVAMHIAALHP 189          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_DEIGD (Elongation factor Ts OS=Deinococcus geothermalis (strain DSM 11300) GN=tsf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.207e-20
Identity = 76/212 (35.85%), Postives = 109/212 (51.42%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLK-LNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            IK+LRE T A M DVK AL D   D E A+  LR+RG V A+KK+ R A EGL+    + ++AA++E+N ETDFV+RN  FQ               V Q        G   +E L+   LD+    GE TV NA+   A  +GEN+ L R   + A   E V+ Y+H++     G+I  L+ L  G  + + D        + +H+ A++P
Sbjct:    5 IKKLRELTGAGMMDVKKALADAGNDEEKAIALLRERGIVKAAKKADREAKEGLVRFVVDGNRAAMVEVNSETDFVARNSDFQAL-------------VEQVAQAALRAGTNNVEELRNFTLDN----GE-TVGNAVAAAAGKIGENLVLNRVAYIDAGEGEHVAGYVHSN-----GKIGVLVDLLGGTEAQAKD--------VALHVAAERP 185          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CAUSK (Elongation factor Ts OS=Caulobacter sp. (strain K31) GN=tsf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.494e-20
Identity = 68/216 (31.48%), Postives = 105/216 (48.61%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESK----AAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LRE++   M D K ALV+ + DI+A++  LR +G   A+KK+ R A EGL+ +          AA +E+N ETDF+SRNE+FQ             E V    +   P G                     V + +T + A +GEN+ LRR    + +   V S Y+H +    LGRI  L+++E   G+     +  +G ++ MH+ A  P
Sbjct:    8 LVKELREKSGVGMMDCKKALVENNGDIDASIDWLRAKGLSKAAKKADRVAAEGLVGIVVRAEGAGMIAAAVEVNAETDFLSRNELFQTAVRKIARAGLDNEGVEAISAAKTPDG-------------------EVVSDLLTHLIATIGENMVLRRSARFAVAHGAVAS-YIHNATAPDLGRIGVLVAIE---GAGDQTKILELGRKIAMHVAATAP 200          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CLOTE (Elongation factor Ts OS=Clostridium tetani GN=tsf PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.176e-20
Identity = 69/215 (32.09%), Postives = 116/215 (53.95%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGET-TVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE T A M D K AL + + D E A++ LR++G   A+KKS R A EGL+   +A+++  A+++E+NCETDFV+ NE F+              N+++  +          E +   ++   IG E  T+++A+T + A +GEN+ +RR   LS  +  ++ +Y+H     G G+I  L+ LE    S   + L  V  ++ M + A  P
Sbjct:    6 MVKELREITGAGMMDCKKALTETNGDTEKAVEVLREKGLAAAAKKSGRIAAEGLVETYIAEDKKNASIVEVNCETDFVAANEEFK----------GLVANIAKQAAN------TKAEDVDSFIEEKYIGSEEGTIKDAVTALVAKLGENMSVRRFKQLSVEN-GIIESYIH-----GDGKIGVLVELECEKES---EVLSEVAKDVAMQVAAVNP 195          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_CLOB66.490e-2133.64Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_JANSC8.477e-2133.33Elongation factor Ts OS=Jannaschia sp. (strain CCS... [more]
EFTS_EXIS21.107e-2033.96Elongation factor Ts OS=Exiguobacterium sibiricum ... [more]
EFTS_BREBN1.107e-2035.55Elongation factor Ts OS=Brevibacillus brevis (stra... [more]
EFTS_CLOBA1.446e-2034.27Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_EXISA1.888e-2034.43Elongation factor Ts OS=Exiguobacterium sp. (strai... [more]
EFTS_GEOKA2.466e-2034.27Elongation factor Ts OS=Geobacillus kaustophilus G... [more]
EFTS_DEIGD4.207e-2035.85Elongation factor Ts OS=Deinococcus geothermalis (... [more]
EFTS_CAUSK5.494e-2031.48Elongation factor Ts OS=Caulobacter sp. (strain K3... [more]
EFTS_CLOTE7.176e-2032.09Elongation factor Ts OS=Clostridium tetani GN=tsf ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
back to top