EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_MAGSM (Elongation factor Ts OS=Magnetococcus sp. (strain MC-1) GN=tsf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.088e-19
Identity = 71/213 (33.33%), Postives = 111/213 (52.11%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++K+LRE+T   M D K AL +   D+EAA+  LRK+G   A KKS+R A EG +      S   ++E+N ETDF ++N+   +            +N           G   ++ LK  LD+P  G    V + +T + A +GEN+ LRR   +  SS  +VS+Y+H       G+I  L++LE    ++S D L+ +G +L MH+ A  P
Sbjct:    6 SMVKELREKTGVGMMDCKKALAETGGDMEAAVDWLRKKGMASAQKKSARVAAEGKVTTLSLGSVGVMLEVNAETDFTAKND--NFCTFADTATKLAADN-----------GCTDIDTLKA-LDYPGTG--RNVGDELTNLIATIGENMNLRRIERMEVSS-GLVSSYIHAG-----GKIGVLVALE---STASADALQELGKKLAMHVAAAAP 193          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STRMK (Elongation factor Ts OS=Stenotrophomonas maltophilia (strain K279a) GN=tsf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.727e-19
Identity = 66/213 (30.99%), Postives = 107/213 (50.23%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +L+K+LRE+T A M + K AL + + DI+AA + +RK G   A KK+ R A EG L LAQ+  KA ++E+N ETDFV+ ++ F+               V+   +     G   +E +K      K+    TV+ A       +GEN+++RR  +++  +   +  Y+HT+     G++  L+ L  GD          +   L MH+ A KP
Sbjct:    6 SLVKELRERTGAGMMECKKALTEANGDIDAAAEAMRKSGAAKADKKADRVAAEGRLGLAQDGGKAVLVEVNSETDFVANDDNFK-------------SFVNAVAAAALASGATDVEAVKA----AKLADGRTVEEARATAVQTLGENIQIRR--MVNVDTTGNIGAYVHTN-----GKVGVLVDLIGGD--------VELARGLAMHVAALKP 186          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STRM5 (Elongation factor Ts OS=Stenotrophomonas maltophilia (strain R551-3) GN=tsf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.727e-19
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +L+K+LRE+T A M + K AL + + DI+AA + +RK G   A KK+ R A EG L LAQ+  KA ++E+N ETDFV+ +  F+               V    +     G   +E +K      K+    TV+ A       +GEN+++RR  ++       +  Y+HT+     G++  L+ L  GD          +   L MH+ A KP
Sbjct:    6 SLVKELRERTGAGMMECKKALTEANGDIDAAAEAMRKSGAAKADKKADRVAAEGRLGLAQDGGKAVLVEVNSETDFVANDVNFK-------------NFVDSVAAAALASGANDVEAVKA----AKLADGRTVEEARATAVQTLGENIQIRR--MVKVDGNNTIGAYVHTN-----GKVGVLVDLVGGD--------VELARGLAMHVAALKP 186          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_PELCD (Elongation factor Ts OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tsf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.727e-19
Identity = 72/213 (33.80%), Postives = 104/213 (48.83%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++ +LR +T A M D K AL + D +IE A+  LRK+G   A+KK+ R A EGL+      S   ++E+N ETDFV++N  FQ             E  +     +    P  LE LK     P  G + TV    T   A +GEN+ LRR F+    +   V+ Y+H     G+G+I  L+ LE   G    + +  +G  L MHI A  P
Sbjct:    6 SMVSELRTKTGAGMMDCKKALSEADGNIEEAVDILRKKGLSAAAKKADRAAAEGLVVGLNEGSCGVLVEVNAETDFVAKNANFQ-------------EFTNGVAKVVVSSKPADLEALKA---LPFPGTDRTVAEEQTHQIATIGENINLRR-FVCFDVAQGAVAVYIH-----GVGKIGVLVELETSKGDD--ERVAALGRNLAMHIAAANP 194          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_ALHEH (Elongation factor Ts OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=tsf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.727e-19
Identity = 70/215 (32.56%), Postives = 113/215 (52.56%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNES--KAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +L+KQLRE+T + M + K ALV+ D D++AA++ +RK+G   A KKS R A EG++A  ++E      ++E+N ETDFV++++ F              + V++      P   E L   +LN           +  A  E+ A +GEN+++RR F+   SS   V+ YLH S      RI  ++ LE GD        +++  ++ MH+ A KP
Sbjct:    6 SLVKQLRERTGSGMMECKKALVETDGDLDAAVELMRKKGLAKADKKSGRIAAEGIIAAKRSEDGHSGVLVEINSETDFVAKSDDF----------LAFADGVARLALEEKPEDLEALMACELN--------GQDLATATKELVAKIGENIQVRR-FVRYGSSGNTVAQYLHGS------RIGVMVELEGGD--------EQLARDVAMHVAASKP 187          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_MACCJ (Elongation factor Ts OS=Macrococcus caseolyticus (strain JCSC5402) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.651e-19
Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+KQLRE+T A M D K AL + + DI+AA+  LR++G   A+KK+ R A EG   +A + + A ++ELN ETDFV+RNE FQ               V +    +    P  L+ L  +    +I    TV+  + E  + +GE + LRR  L   +  +    YLH   + G+        L V + S+  +  K    ++ MHI A  P
Sbjct:    7 LVKQLRERTGAGMMDCKKALTETNGDIDAAVDYLREKGIAKAAKKADRIAAEGTTYVASSGNTAVLLELNSETDFVARNEGFQAL-------------VKEMADHILATKPADLDALMAS----EIETGKTVETKLNEAISTIGEKLTLRRFVLAEKTDADAFGEYLHMGGRIGV--------LAVVENSTDAEAAK----DVAMHIAALNP 189          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_IDILO (Elongation factor Ts OS=Idiomarina loihiensis GN=tsf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.651e-19
Identity = 71/212 (33.49%), Postives = 111/212 (52.36%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LRE+T A M D K AL + D D+EAA++ +RK G+  A+KK+ R A EG++ +    ++A ++ELNCETDFV+R++ F              E   +  +  F      +E LK       I G+ TV+    ++ A +GEN+ +RR   L A   +VV+TY H +      RI   ++L  GD        + +  +L MH+ A  P
Sbjct:    7 LVKELRERTGAGMMDCKKALQEVDGDMEAAIELMRKSGQAKAAKKAGRVAAEGVILVKSEGNQATLVELNCETDFVARDDSF-------------LEFGDKVINAAFANKENDVEALKTT----DIDGQ-TVEKTREDLVAKIGENMNVRRVQTLEAG--DVVATYTHGA------RIGVAVALTGGD--------EDLARDLCMHVAASSP 184          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STAS1 (Elongation factor Ts OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.075e-19
Identity = 69/213 (32.39%), Postives = 109/213 (51.17%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEG-LKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KKS R A EGL+ + +  ++AA++E+N ETDFV+RNE FQ             + V +    +     E +E  L+ NL   K     +V   + E  + +GE + +RR  + + +  +    YLH   + G+        L V +GS+  +  K    ++ MHI A  P
Sbjct:    7 LVKELREKTGAGMMDCKKALTETDGDIDKAVDFLREKGIAKAAKKSDRIAAEGLVHVEERGNEAAIVEINSETDFVARNEGFQ-------------QLVKEIAIQVLDTKAETVEALLETNLPDGK-----SVDQRVKEAISTIGEKLSIRRFAVRTKTDNDSFGAYLHMGGRIGV--------LTVVEGSTDAEAAK----DVAMHIAAINP 189          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STAAB (Elongation factor Ts OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.075e-19
Identity = 68/218 (31.19%), Postives = 104/218 (47.71%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    S A ++E+N ETDFV+RNE FQ             E V +  + +     E +E L             +V   I E  + +GE + +RR  + + +  +    YLH   + G+        L V +GS+     +    ++ MHI A  P
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGSDAVIVEINSETDFVARNEGFQ-------------ELVKEIANQVLDTKAETVEALM----ETTFPNGKSVDERIKEAISTIGEKLSVRRFAIRNKNDKDAFGAYLHMGGRIGV--------LAVVEGSTD----EEAARDVAMHIAAINP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BACC2 (Elongation factor Ts OS=Bacillus cereus (strain G9842) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.075e-19
Identity = 71/212 (33.49%), Postives = 104/212 (49.06%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K AL + + D+E A+  LR++G   A+KK+ R A EGL  +  N + A ++ELN ETDFV++NE FQ               + +  + L    P  +E          I G  TV+  I E  A +GE + LRR  ++S +  +    YLH       GRI  L  LE   GS+     +    ++ MHI A  P
Sbjct:    7 MVKELREKTGAGMMDCKKALTETNGDMEKAIDFLREKGIAKAAKKADRIAAEGLTFIETNGNDALILELNSETDFVAKNEGFQAL-------------IKELAAHLLANKPANVEEAMTQ----TIEGGKTVEEHINEAIAKIGEKLTLRRFEIVSKTDADAFGAYLHMG-----GRIGVLTVLE---GSTD----EAAAKDVAMHIAAVNP 189          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_MAGSM2.088e-1933.33Elongation factor Ts OS=Magnetococcus sp. (strain ... [more]
EFTS_STRMK2.727e-1930.99Elongation factor Ts OS=Stenotrophomonas maltophil... [more]
EFTS_STRM52.727e-1930.99Elongation factor Ts OS=Stenotrophomonas maltophil... [more]
EFTS_PELCD2.727e-1933.80Elongation factor Ts OS=Pelobacter carbinolicus (s... [more]
EFTS_ALHEH2.727e-1932.56Elongation factor Ts OS=Alkalilimnicola ehrlichei ... [more]
EFTS_MACCJ4.651e-1932.55Elongation factor Ts OS=Macrococcus caseolyticus (... [more]
EFTS_IDILO4.651e-1933.49Elongation factor Ts OS=Idiomarina loihiensis GN=t... [more]
EFTS_STAS16.075e-1932.39Elongation factor Ts OS=Staphylococcus saprophytic... [more]
EFTS_STAAB6.075e-1931.19Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_BACC26.075e-1933.49Elongation factor Ts OS=Bacillus cereus (strain G9... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
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