EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_WOLSU (Elongation factor Ts OS=Wolinella succinogenes GN=tsf PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.934e-19
Identity = 73/218 (33.49%), Postives = 113/218 (51.83%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPV---GPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVG-DGSSSFDPLKRVGSELGMHIVAQKP 735
            L+KQLRE T A M D K ALV+ D DIE A++ LR++G   A+KK+ R A+EG+++  +A + SKA+++E+N ETDFV++NE  Q+            ++       L  V   G E+ E L+ N+                   A +GEN+ +RR   L      +V+ Y+H++     GR+  L+ ++ G +GS S      +   L MH  A KP
Sbjct:    8 LVKQLREMTDAGMMDCKKALVETDGDIEKAVEYLREKGLSKAAKKADRVASEGVVSVEVASDFSKASLLEINSETDFVAKNE--QFKELVAKTSKLVHDHALSSTETLHTVSVDGMEFSEYLQQNI-------------------AKIGENIVVRRIVTLETKRGAIVNGYVHSN-----GRVGVLIGIKFGKEGSKS--ACVELARNLCMHAAAMKP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STAAW (Elongation factor Ts OS=Staphylococcus aureus (strain MW2) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.036e-18
Identity = 67/218 (30.73%), Postives = 105/218 (48.17%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ             E V +  + +     E +E L        +    +V   I E  + +GE + +RR  + + +  +    YLH   + G+        L V +GS+     +    ++ MHI A  P
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ-------------ELVKEIANQVLDTKAETVEALM----ETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGV--------LTVVEGSTD----EEAARDVAMHIAAINP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STAAT (Elongation factor Ts OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.036e-18
Identity = 67/218 (30.73%), Postives = 105/218 (48.17%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ             E V +  + +     E +E L        +    +V   I E  + +GE + +RR  + + +  +    YLH   + G+        L V +GS+     +    ++ MHI A  P
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ-------------ELVKEIANQVLDTKAETVEALM----ETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGV--------LTVVEGSTD----EEAARDVAMHIAAINP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STAAS (Elongation factor Ts OS=Staphylococcus aureus (strain MSSA476) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.036e-18
Identity = 67/218 (30.73%), Postives = 105/218 (48.17%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ             E V +  + +     E +E L        +    +V   I E  + +GE + +RR  + + +  +    YLH   + G+        L V +GS+     +    ++ MHI A  P
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ-------------ELVKEIANQVLDTKAETVEALM----ETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGV--------LTVVEGSTD----EEAARDVAMHIAAINP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STAAR (Elongation factor Ts OS=Staphylococcus aureus (strain MRSA252) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.036e-18
Identity = 67/218 (30.73%), Postives = 105/218 (48.17%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ             E V +  + +     E +E L        +    +V   I E  + +GE + +RR  + + +  +    YLH   + G+        L V +GS+     +    ++ MHI A  P
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ-------------ELVKEIANQVLDTKAETVEALM----ETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGV--------LTVVEGSTD----EEAARDVAMHIAAINP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STAAC (Elongation factor Ts OS=Staphylococcus aureus (strain COL) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.036e-18
Identity = 67/218 (30.73%), Postives = 105/218 (48.17%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ             E V +  + +     E +E L        +    +V   I E  + +GE + +RR  + + +  +    YLH   + G+        L V +GS+     +    ++ MHI A  P
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ-------------ELVKEIANQVLDTKAETVEALM----ETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGV--------LTVVEGSTD----EEAARDVAMHIAAINP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STAA8 (Elongation factor Ts OS=Staphylococcus aureus (strain NCTC 8325) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.036e-18
Identity = 67/218 (30.73%), Postives = 105/218 (48.17%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ             E V +  + +     E +E L        +    +V   I E  + +GE + +RR  + + +  +    YLH   + G+        L V +GS+     +    ++ MHI A  P
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ-------------ELVKEIANQVLDTKAETVEALM----ETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGV--------LTVVEGSTD----EEAARDVAMHIAAINP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_STAA3 (Elongation factor Ts OS=Staphylococcus aureus (strain USA300) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.036e-18
Identity = 67/218 (30.73%), Postives = 105/218 (48.17%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ             E V +  + +     E +E L        +    +V   I E  + +GE + +RR  + + +  +    YLH   + G+        L V +GS+     +    ++ MHI A  P
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ-------------ELVKEIANQVLDTKAETVEALM----ETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGV--------LTVVEGSTD----EEAARDVAMHIAAINP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BACWK (Elongation factor Ts OS=Bacillus weihenstephanensis (strain KBAB4) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.036e-18
Identity = 70/212 (33.02%), Postives = 104/212 (49.06%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K AL + + D+E A+  LR++G   A+KK+ R A EGL  +  N ++  ++ELN ETDFV++NE FQ               + +  + L    P  +E          I G  TV+  I E  A +GE + LRR  ++S +  +    YLH       GRI  L  LE   GS+     +    ++ MHI A  P
Sbjct:    7 MVKELREKTGAGMMDCKKALTETNGDMEKAIDFLREKGIAKAAKKADRIAAEGLTFIETNGNEGLILELNSETDFVAKNEGFQAL-------------IKELAAHLLANKPANVEEAMAQ----TIEGGKTVEEHINEAIAKIGEKLTLRRFEIVSKTDADAFGAYLHMG-----GRIGVLTVLE---GSTD----EAAAKDVAMHIAAVNP 189          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RICBR (Elongation factor Ts OS=Rickettsia bellii (strain RML369-C) GN=tsf PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.353e-18
Identity = 61/211 (28.91%), Postives = 102/211 (48.34%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++LRE+T A M D K AL++   ++E A+  LR +G   A+KK+ R A EGL A   +     V+E+N ETDFV+RNE FQ             +++ +  +   P G                    +V+  + E  A +GEN+ LRR  +L  S    + +Y+H    S LG+I+ L+ L+    +     L+ +  ++ +H+    P
Sbjct:   11 VRELREKTGAGMMDCKKALIETKGNLEEAVDFLRTKGLAAAAKKAGRVAAEGLTAAKVDGLTGVVVEINSETDFVARNEQFQNLVTNIANLAINVKDIEELKAAKMPNG-------------------KSVEEDVVENIATIGENLTLRRMEVLKVSE-GAIGSYVHNEVASNLGKISVLVGLQ--SSAKDTAKLEALAKQIAVHVAGNNP 199          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_WOLSU7.934e-1933.49Elongation factor Ts OS=Wolinella succinogenes GN=... [more]
EFTS_STAAW1.036e-1830.73Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_STAAT1.036e-1830.73Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_STAAS1.036e-1830.73Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_STAAR1.036e-1830.73Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_STAAC1.036e-1830.73Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_STAA81.036e-1830.73Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_STAA31.036e-1830.73Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_BACWK1.036e-1833.02Elongation factor Ts OS=Bacillus weihenstephanensi... [more]
EFTS_RICBR1.353e-1828.91Elongation factor Ts OS=Rickettsia bellii (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
back to top