EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHIL3 (Elongation factor Ts OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tsf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.676e-25
Identity = 74/212 (34.91%), Postives = 110/212 (51.89%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K AL +   D+EAA+  LR +G   A KKS RTA EGL+ ++   +KA V+E+N ETDFV+RN+ FQ                   G     V  +          +P  G   +V + I +  A +GEN+ LRR   LS     VV+TY+H +   GLG++  L++L+    +   + L  +G ++ MHI A  P
Sbjct:    8 MVKELREKTGAGMMDCKKALAETAGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVSSQGTKAVVVEVNSETDFVARNDAFQELVR---------------GIAKVAVSTDGTVDAVAAATYPASG--KSVSDTIKDAIATIGENMNLRRSVALSVED-GVVATYIHNAVSDGLGKLGVLVALK---STGDKEALNAIGRQVAMHIAATAP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHOPS (Elongation factor Ts OS=Rhodopseudomonas palustris (strain BisB5) GN=tsf PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.264e-24
Identity = 80/222 (36.04%), Postives = 116/222 (52.25%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIG----GETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    ++K+LRE T   M D K AL + D ++EAA+  LRK+G   A+KK+ R A EGL+    + +K  VIE+N ETDFV+RNE FQ                     GL  +  +    LK+  D  KI     G +TV  AI++  A +GEN+ LRR   L  +   VV++Y+H +   G G++  +++LE    +   D L  +G +L MHI A  P
Sbjct:    2 ATITAAMVKELRETTGVGMMDCKQALAENDGNMEAAVDWLRKKGLSKAAKKAGRVAAEGLIGALTDGTKGVVIEVNSETDFVARNEQFQ---------------------GLVKMIAQV--ALKVGADVDKINAAPVGSSTVAGAISDAIATIGENMTLRRAAALEVTQ-GVVASYIHNAVIDGAGKMGVIVALE---STGKADELGVLGRQLAMHIAATNP 196          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHIEC (Elongation factor Ts OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tsf PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.264e-24
Identity = 76/212 (35.85%), Postives = 111/212 (52.36%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K AL +   D+EAA+  LR +G   A KKS RTA EGL+ ++   +KA V+E+N ETDFV+RN+ FQ               VS  G+        Y          P  G   +V + I +  A +GEN+ LRR   LS     VV+TY+H +   GLG++  L++L+    +   + L  +G ++ MHI A  P
Sbjct:    8 MVKELREKTGAGMMDCKKALAETSGDMEAAIDWLRAKGIAKADKKSGRTAAEGLVGVSSEGTKAVVVEVNSETDFVARNDAFQ-----DLVRGIAKVAVSTNGTVEAVAAATY----------PASG--KSVSDTIKDAIATIGENMNLRRSIALSVED-GVVATYIHNAVSDGLGKLGVLVALK---STGDKEALNAIGRQVAMHIAATAP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHOPB (Elongation factor Ts OS=Rhodopseudomonas palustris (strain BisB18) GN=tsf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.651e-24
Identity = 75/222 (33.78%), Postives = 115/222 (51.80%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIG----GETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    ++K LRE T   M D K AL + D D++AA+  LRK+G   A+KK+ R A EGL+    +++K  ++E+N ETDFV+RNE FQ                     GL  +  +    LK+  D  KI     G +TV  AI +  A +GEN+ LRR  +L      +V++Y+H +   G G++  +++LE    +   D L  +G +L MH+ +  P
Sbjct:    2 ATITAAMVKDLRETTGVGMMDCKQALTENDGDMQAAIDWLRKKGLSKAAKKAGRVAAEGLIGALTDKTKGVLVEVNSETDFVARNEQFQ---------------------GLVKMIAQV--ALKVGADLDKINAAPVGSSTVATAIADAIATIGENMTLRRAAVLEVGQ-GLVASYVHNAVTDGAGKLGVIVALE---SAGKTDELAALGKQLSMHVASANP 196          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_PARL1 (Elongation factor Ts OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=tsf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.651e-24
Identity = 76/214 (35.51%), Postives = 114/214 (53.27%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLE-VGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++KQLRE T A M D K AL +   D+EAA+  LR +G   A+KK+ R A EGL+ +  N +  A++E+N ETDFV+RNE FQ             + VS   S    V  ++ + +         G   +VQ+ +TE+   +GEN+ +RR   +S S    V+ Y+H+    GLG+I  L+ LE  GD +     L  +G ++ MHI A  P
Sbjct:    7 SMVKQLRETTGAGMMDCKSALTETGGDMEAAIDWLRTKGLAKAAKKAGRVAAEGLIGVVANGTAGAIVEVNSETDFVARNEQFQ-------------KMVSDIASAALSVEGDFDKLVASTYP----GSSKSVQDYVTEMVGTIGENMSVRRAGCISVSD-GAVAAYVHSQVVPGLGKIGVLVGLESKGDKTK----LLELGRQIAMHIAATNP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_METEP (Elongation factor Ts OS=Methylobacterium extorquens (strain PA1) GN=tsf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.651e-24
Identity = 79/212 (37.26%), Postives = 114/212 (53.77%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LRE+T A M D K AL + + D+EAA+  LRK+G   A+KK+ R A EGL+A+      AAV+E+N ETDFV+RN+ FQ             +                LEGL+     P  G   TVQ  ++ + A +GEN+ LRR   L  S   V+++Y+H     GLG+I  L++LE  +G   F  L  +G ++ MH+ A  P
Sbjct:    8 LVKELREKTGAGMMDCKGALNETNGDLEAAVDWLRKKGLAKAAKKAGRVAAEGLVAVESAGRHAAVVEVNSETDFVARNDGFQAFAREAAKLALNTDGT--------------LEGLQA-ATFP--GSSETVQEKLSNLIATIGENMTLRRVAKLEVSK-GVIASYVHGQINEGLGKIGVLVALE-SEGDVEF--LSTLGRQIAMHVAATNP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_METC4 (Elongation factor Ts OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=tsf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.651e-24
Identity = 79/212 (37.26%), Postives = 114/212 (53.77%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LRE+T A M D K AL + + D+EAA+  LRK+G   A+KK+ R A EGL+A+      AAV+E+N ETDFV+RN+ FQ             +                LEGL+     P  G   TVQ  ++ + A +GEN+ LRR   L  S   V+++Y+H     GLG+I  L++LE  +G   F  L  +G ++ MH+ A  P
Sbjct:    8 LVKELREKTGAGMMDCKGALNETNGDLEAAVDWLRKKGLAKAAKKAGRVAAEGLVAVESAGRHAAVVEVNSETDFVARNDGFQAFAREAAKLALNTDGT--------------LEGLQA-ATFP--GSSETVQEKLSNLIATIGENMTLRRVAKLEVSK-GVIASYVHGQINEGLGKIGVLVALE-SEGDVEF--LSTLGRQIAMHVAATNP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_AZOC5 (Elongation factor Ts OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=tsf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.651e-24
Identity = 74/213 (34.74%), Postives = 111/213 (52.11%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ-YXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LR++T A M D K AL + + DIEAA+  LRK+G   A+KK+ R A EGL+A+  +   AA IE+N ETDFV+RN  FQ +             ++    +  FP                  G   TV + +  + A +GEN+ LRR   L+ S+  V++TY+H +   G GRI  L++LE        + L  +G ++ MH+ A  P
Sbjct:    8 LVKELRDKTGAGMMDCKAALTENNGDIEAAIDWLRKKGLAKAAKKAGRVAAEGLVAVESSGHYAAAIEVNAETDFVARNADFQAFVREAAKVALNTDGSIEAVAAAHFP------------------GESVTVADKLATLIATIGENMTLRRSVRLTVSA-GVIATYVHGAVSEGQGRIGVLVALE---SQGDVEKLSTLGRQIAMHVAALNP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_MARMM (Elongation factor Ts OS=Maricaulis maris (strain MCS10) GN=tsf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.156e-24
Identity = 75/212 (35.38%), Postives = 113/212 (53.30%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LR++T   M D K AL + D D EAA+  LRK+G   A+KK+ R A EGL+A+A    + AV+E+N ETDFV+RNE FQ                +        +G     G    +      G +TV++ +T + A +GEN+ LRR  ++ A  P VV++Y+H    + +G I  L+ L+  DG    D L  +G ++ MH+ A  P
Sbjct:    8 LVKELRDKTGVGMMDCKKALGETDGDFEAAVDWLRKKGLSKAAKKADRVAAEGLVAVATQGGQGAVVEVNSETDFVARNEKFQ---------------TAVKEIAALAIGG---SGDVAEIKAASTSGGSTVEDHLTNLIATIGENMALRRAAVVVA-EPGVVASYVHNPAATDMGAIGVLVGLQ-SDGDK--DKLAELGRKIAMHVAAGSP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_METPB (Elongation factor Ts OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=tsf PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.815e-24
Identity = 77/212 (36.32%), Postives = 112/212 (52.83%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LRE+T A M D K AL + + D+EAA+  LRK+G   A+KK+ R A EGL+A+      AA++E+N ETDFV+RN+ FQ             +                LEGL+     P  G   TVQ  ++ + A +GEN+ LRR   L  S   V+++Y+H     GLG+I  L++LE        + L  +G ++ MHI A  P
Sbjct:    8 LVKELREKTGAGMMDCKGALNETNGDLEAAVDWLRKKGLAKAAKKAGRVAAEGLVAVESAGHHAAIVEVNSETDFVARNDGFQAFAREAAKLALNTDGT--------------LEGLQA-ATFP--GSSETVQEKLSNLIATIGENMTLRRVAKLEVSK-GVIASYVHGQISEGLGKIGVLVALE---SEGDVEVLSTLGRQIAMHIAATSP 198          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_RHIL39.676e-2534.91Elongation factor Ts OS=Rhizobium leguminosarum bv... [more]
EFTS_RHOPS1.264e-2436.04Elongation factor Ts OS=Rhodopseudomonas palustris... [more]
EFTS_RHIEC1.264e-2435.85Elongation factor Ts OS=Rhizobium etli (strain CFN... [more]
EFTS_RHOPB1.651e-2433.78Elongation factor Ts OS=Rhodopseudomonas palustris... [more]
EFTS_PARL11.651e-2435.51Elongation factor Ts OS=Parvibaculum lavamentivora... [more]
EFTS_METEP1.651e-2437.26Elongation factor Ts OS=Methylobacterium extorquen... [more]
EFTS_METC41.651e-2437.26Elongation factor Ts OS=Methylobacterium chloromet... [more]
EFTS_AZOC51.651e-2434.74Elongation factor Ts OS=Azorhizobium caulinodans (... [more]
EFTS_MARMM2.156e-2435.38Elongation factor Ts OS=Maricaulis maris (strain M... [more]
EFTS_METPB2.815e-2436.32Elongation factor Ts OS=Methylobacterium populi (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
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