EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_AGRRK (Elongation factor Ts OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tsf PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.815e-24
Identity = 78/213 (36.62%), Postives = 112/213 (52.58%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLE-VGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LRE++ A M D K AL++ + DIEAA+  LR +G   A KKS RTA EGL+A+A    KA V+ELN ETDFV+RN+ FQ             +   +  S                  +P  G    V + I +  A +GEN+ LRR   L      VV+TY+H +   G+G++  L++L+ VGD +     L  +G ++ MHI A  P
Sbjct:    8 LVKELREKSGAGMMDCKKALIETNGDIEAAIDWLRAKGISKADKKSGRTAAEGLVAIAGAGHKAVVVELNSETDFVARNDAFQELVRGIAEVALSTDGTVEAISA---------------ATYPASG--KPVADTIKDAIATIGENMTLRRAAKLEVEH-GVVATYIHNAAGDGIGKLGVLVALKSVGDKA----VLTSIGRQVAMHIAATNP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHOP5 (Elongation factor Ts OS=Rhodopseudomonas palustris (strain BisA53) GN=tsf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.677e-24
Identity = 79/222 (35.59%), Postives = 114/222 (51.35%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIG----GETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    ++K+LRE T   M D K AL + D ++EAA+  LRK+G   A+KK+ R A EGL+    +  K  V+E+N ETDFV+RNE FQ                     GL  +  +    LK+  D   I     G  TV  AI +  A +GEN+ LRR  LLS  +  VV++Y+H +   G G++  L++LE    +   D L  +G ++ MH+ A  P
Sbjct:    2 ATITAGMVKELRETTGVGMMDCKQALSENDGNMEAAIDWLRKKGLSKAAKKAGRVAAEGLIGALTDGKKGVVVEVNSETDFVARNEQFQ---------------------GLVKMIAQV--ALKVGDDIDAINAAPVGSVTVATAIADAIATIGENMTLRRAKLLSVEN-GVVASYVHGAVVEGAGKLGVLVALE---STGKTDELALLGRQIAMHVAAANP 196          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_NITHX (Elongation factor Ts OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=tsf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.677e-24
Identity = 74/218 (33.94%), Postives = 116/218 (53.21%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    ++K LRE T   M D K AL + D D++AA+  LRK+G   A+KK+ R A EGL+    + +K  V+E+N ETDFV+RNE FQ             + V+Q    +     E ++  K+        G  TV+ AI++  A +GEN+ LRR   L  S   +V++Y+H +   G G++  +++LE    S + D L  +G ++ MH+ +  P
Sbjct:    2 ATITAAMVKDLRETTGVGMMDCKQALTENDGDMQAAIDWLRKKGLSKAAKKAGRVAAEGLIGAVTSGNKGVVVEVNSETDFVARNEQFQ----------GLVKMVAQVALSV-GADVEVIKAAKV--------GSATVETAISDAIATIGENMTLRRAASLEVSK-GLVASYVHNAVIDGAGKMGVIVALE---SSGNADELAALGRQIAMHVASSNP 196          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_METRJ (Elongation factor Ts OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=tsf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.677e-24
Identity = 77/212 (36.32%), Postives = 108/212 (50.94%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K AL +   DIEAA+  LRK+G   A+KK+ R A EGL+A+      AAV+E+N ETDFV+RN+ FQ             +                LEGL+     P  G   TV   +  + A +GEN+ LRR   L      V+++Y+H     GLG+I  L++LE        D L  +G ++ MHI A  P
Sbjct:    8 MVKELREKTGAGMMDCKGALNETQGDIEAAVDWLRKKGLAKAAKKAGRVAAEGLVAVESAGHHAAVVEVNSETDFVARNDAFQAFAREAAKIALNTDGT--------------LEGLQ-TAHFP--GATETVSEKLQALIATIGENMNLRRVTKLEVKK-GVIASYVHNQISEGLGKIGVLVALE---SEGDVDALSALGRQIAMHIAATNP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_EHRCJ (Elongation factor Ts OS=Ehrlichia canis (strain Jake) GN=tsf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.677e-24
Identity = 79/215 (36.74%), Postives = 117/215 (54.42%), Query Frame = 1
Query:   94 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEY-LEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++ IK+LR+ T A + D K AL  CD DIE A   LR++G   A KKS++  ++GL+A+  + +K A++E+N ETDFV+RNE FQ                      L  +  +Y  E ++  L H  I G T+V + I    AI+GEN+ L +   LS +S  VVS Y+H      LG+I  +++LE    S   + LK +  ++ MHIVA KP
Sbjct:    5 ISAIKKLRDLTGAGVGDCKEALSSCDGDIEKAKNYLREQGIAKAYKKSTKDVSDGLIAIHVDGNKGAILEVNSETDFVARNEKFQKLVL-----------------NLVSLANQYATESIEDFLKHEYISG-TSVHDEIMSNIAIIGENIHLNKIGCLSVNS-GVVSGYIHNPVIDNLGKIGAIVALESNGDS---EKLKVLAKQIAMHIVAAKP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BART1 (Elongation factor Ts OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=tsf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.677e-24
Identity = 74/211 (35.07%), Postives = 115/211 (54.50%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K+LRE + A M D K AL + + D++AA+  LRK+G   A KK+ RTA EGL+ +   +S A ++E+N ETDFV+RN+ FQ              NV+          P  +E + ++L +P  G E TV+  I +    +GEN+  RR   LS  +  VV+TY+H S   GLG++  L+++E    + + +     G ++ MHI A  P
Sbjct:    8 VKELRELSGAGMMDCKAALAETNGDMDAAVDWLRKKGIAKADKKAGRTAAEGLIGVVSKDSHAVLVEINSETDFVARNDGFQ----------DIVRNVATAALDT----PGDVESVSVSL-YP--GSEKTVELTIKDAIGTIGENMTFRRSAKLSVEN-GVVATYIHNSVSDGLGKLGVLVAIET---TGNKEAALAFGRQVAMHIAATNP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BARHE (Elongation factor Ts OS=Bartonella henselae GN=tsf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.677e-24
Identity = 71/212 (33.49%), Postives = 107/212 (50.47%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXE-NVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K+LRE + A M D K AL + + D+EAA+  LRK+G   A KK+ RTA EGL+ +   +  A ++E+N ETDFV+RN++FQ             E ++    +  +P                  G E TV+  I +  A +GEN+  RR   LS     VV+TY+H S   GLG++  L+++E      +       G ++ MHI A  P
Sbjct:    8 VKELRELSGAGMMDCKAALAETNGDMEAAVDWLRKKGIAKADKKAGRTAAEGLIGVVSQDLSAVLVEINSETDFVARNDVFQDIVRNVATAALGTEGSIDAVCASFYP------------------GSEKTVEATIKDAIATIGENMTFRRSAKLSVED-GVVATYIHNSVAEGLGKLGVLVAIETTGNKKA---AAAFGRQVAMHIAATNP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_ORITB (Elongation factor Ts OS=Orientia tsutsugamushi (strain Boryong) GN=tsf PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.272e-24
Identity = 69/214 (32.24%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   94 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++L+K+LR+ T A M   K AL +   DIE A+K LRK      S K  R A EG++ALA + +K A+IE+  ETDFV+RNE  Q             +N++                   +L + K+    T+++ I++  A++GEN+++ R   +      ++++Y+H S    LG+IA L++LE   G+   D L ++G  + MHI A  P
Sbjct:   24 ISLVKKLRDATGAAMTSCKQALQEAKGDIEEAIKVLRKTNLAQMSSKLQRKADEGIVALAVDNNKGAIIEIKFETDFVARNERLQKLAMEAAQLALVHDNLT-------------------DLKNAKLSSGETLESQISQDIAVIGENIQVSRIRQVKLVDNGIIASYIHNSVAPNLGQIAVLVALE---GNVESDKLTKLGKNIAMHIAATNP 215          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BEII9 (Elongation factor Ts OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=tsf PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.272e-24
Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T   M D K AL +   DIEAA+  LRK+G   A+KK+ R A EGL+AL    +   ++E+N ETDFV+RNE FQ+             N+++          E L+G      H   GG   + +AI+E  A +GEN+ LRR  L+   +   + +Y+H S   GLG+I  L+ L     + +  PL R   E+ +HI A  P
Sbjct:    8 MVKELREKTGTGMMDCKNALNETGGDIEAAVDWLRKKGLSKAAKKAGRVAAEGLIALDVEGTSGVLVEVNSETDFVARNEDFQF----------LVRNIARVAIQQGLTDVEALKGA-----HYPAGG--VLGDAISEAVAKIGENMTLRRAALIHVPT-GAIGSYMHNSVTEGLGKIGVLVGLATEGNAEAVQPLAR---EIALHIAAAAP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_SILST (Elongation factor Ts OS=Silicibacter sp. (strain TM1040) GN=tsf PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.191e-24
Identity = 73/212 (34.43%), Postives = 108/212 (50.94%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE T A M D K ALV+ D D+EAA+  LR +G   A+KKS RTA EGL+A+  +  K   +E+N ETDFV++N  FQ               V +                   L    +GG+ TV   +T+  A +GEN+ LRR   ++    E V +Y+H +   G+G+I  L++L  GD        + +G ++ MHI A  P
Sbjct:    7 MVKELRESTGAGMMDAKKALVENDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVVVDGGKGVAVEVNSETDFVAKNGEFQTMVAGIAKAALSVNTVEE-------------------LAEADLGGK-TVATTLTDKIATIGENMTLRR---MAKLEGETVVSYVHNAATDGMGKIGVLVALSGGD--------EAIGKQVAMHIAAVNP 187          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_AGRRK2.815e-2436.62Elongation factor Ts OS=Agrobacterium radiobacter ... [more]
EFTS_RHOP53.677e-2435.59Elongation factor Ts OS=Rhodopseudomonas palustris... [more]
EFTS_NITHX3.677e-2433.94Elongation factor Ts OS=Nitrobacter hamburgensis (... [more]
EFTS_METRJ3.677e-2436.32Elongation factor Ts OS=Methylobacterium radiotole... [more]
EFTS_EHRCJ3.677e-2436.74Elongation factor Ts OS=Ehrlichia canis (strain Ja... [more]
EFTS_BART13.677e-2435.07Elongation factor Ts OS=Bartonella tribocorum (str... [more]
EFTS_BARHE3.677e-2433.49Elongation factor Ts OS=Bartonella henselae GN=tsf... [more]
EFTS_ORITB6.272e-2432.24Elongation factor Ts OS=Orientia tsutsugamushi (st... [more]
EFTS_BEII96.272e-2435.85Elongation factor Ts OS=Beijerinckia indica subsp.... [more]
EFTS_SILST8.191e-2434.43Elongation factor Ts OS=Silicibacter sp. (strain T... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
back to top