EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BRAJA (Elongation factor Ts OS=Bradyrhizobium japonicum GN=tsf PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.070e-23
Identity = 79/218 (36.24%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    ++K LRE T A M D K AL + D ++EAA   LRK+G   A+KKS R A EGL+      +K  V+E+N ETDFV+RN  FQ               V       F VG + +E +K      K+ G+ T++ AI +  A +GEN+ LRR   L  S   VVS Y+H +   G G++  +++LE        D L  +G ++ MH+ A  P
Sbjct:    2 ATITAAMVKDLRESTGAGMMDCKAALTENDGNMEAAQDWLRKKGLSKAAKKSGRVAAEGLIGALTKGTKGVVVEVNSETDFVARNGQFQGL-------------VKMIAQVAFDVGAD-VEKIKA----AKV-GDVTIETAINDAIATIGENMTLRRAASLEVSQ-GVVSHYVHGAVIDGAGKMGVIVALE---SPGKADELAALGRQIAMHVAAANP 196          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_OCHA4 (Elongation factor Ts OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=tsf PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.397e-23
Identity = 74/214 (34.58%), Postives = 113/214 (52.80%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLE-VGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +L+K+LR+ T A M D K AL + + DIEAA+  LR +G   A KK+ RTA EGL+ +A + +KA V+E+N ETDFV+RN+ FQ               ++Q             +G    + +  + G+T  + A   VA I GEN+  RR   L+     VV+TY+H     GLG++  L+++E  GD  ++       G ++ MH+ A  P
Sbjct:    6 SLVKELRDLTGAGMMDCKTALAETNGDIEAAVDWLRAKGIAKADKKAGRTAAEGLVGVAASGNKAVVVEVNSETDFVARNDAFQ----------DLVRKIAQAALS--------TDGSTEAVANANVDGKTVTETAKDAVATI-GENIGFRRSAALTVPQ-GVVATYIHNGVADGLGKLGVLVAIETAGDAEAA----NAFGRQVAMHVAAINP 195          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_SPHAL (Elongation factor Ts OS=Sphingopyxis alaskensis GN=tsf PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.825e-23
Identity = 72/214 (33.64%), Postives = 110/214 (51.40%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ--YXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LR++T A M D K AL + + DIEA++  LR +G   A+KK+ R A EGL+  A + ++ A++E+N ETDFV +NE FQ                ++    +  +P G                    TV   +T   A +GEN  LRR  LL+ +S   V+ Y+H +   G+G+I  L++LE   G+   +PL   G +L MH+ A  P
Sbjct:    8 LVKELRDRTGAGMMDCKKALAENNGDIEASIDWLRTKGLAAAAKKAGRVAAEGLVGFATDGTRGALVEVNSETDFVGKNEQFQAFVRDVTQVALAEGITDIDALAAAPYPTG-------------------GTVAEQLTSNIATIGENQSLRRVALLTVNS-GAVTGYVHNAAAPGMGKIGVLVALESSAGADVLEPL---GKQLAMHVAAANP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_DINSH (Elongation factor Ts OS=Dinoroseobacter shibae (strain DFL 12) GN=tsf PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.825e-23
Identity = 74/212 (34.91%), Postives = 112/212 (52.83%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LR++T A M D K AL + D D+EAA+  LR +G   A+KKS RTA EGL+ +A  +  A  +E+N ETDFV++N  FQ                S   + L     + L+G        ++GG+ TV+  +T+  A +GEN+ LRR   +   S E V +Y+H +   G+G+I  L++L   D          +G ++ MHI A  P
Sbjct:    7 LVKELRDKTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVGVAVADGAAVAVEVNSETDFVAKNAEFQAMV------------ASFAEAALSASDLDALKG-------TEVGGK-TVETILTDKIATIGENMTLRR---MEKLSGETVVSYVHNAAADGMGKIGVLVALTGADNG--------IGKQIAMHIAAANP 187          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_METSB (Elongation factor Ts OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=tsf PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.113e-23
Identity = 81/212 (38.21%), Postives = 111/212 (52.36%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL +   DIEAA+  LRK+G   A+KKS R A EGL+A+A +E+   V+E+N ETDFV+RNE FQ                     GL  V     E LK    +P   G +TV  AI    A +GEN+ LRR   ++ +   VV  Y+H +   GLG+I  ++ LE    +    PL R+   + +HI A  P
Sbjct:    8 MVKDLREKTGAGMMDCKNALNETGGDIEAAIDWLRKKGLSKAAKKSGRIAAEGLVAVAVHETDGVVVEVNSETDFVARNEEFQALARTIALVAVE--------KGLTDV-----EALK-GAHYP---GGSTVAEAIANSVATIGENMTLRRVAAVNVAQ-GVVGQYVHNAVADGLGKIGVIVGLESTGDAVVLAPLARL---IALHIAAASP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_SPHWW (Elongation factor Ts OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=tsf PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.065e-23
Identity = 73/212 (34.43%), Postives = 111/212 (52.36%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ-YXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K+LRE++ A M D K AL + + D+EAA+  LR +G   A+KKSSRTA EGL+ ++   +K A +E+N ETDFV++N+ FQ +            ++V+      +P                   G  TV   +T   A +GEN  LRR  ++  S   VV  Y+H +   GLG+I  L++LE   G +    ++ VG ++ MHI A  P
Sbjct:    9 VKELREKSGAGMMDCKKALTETNGDMEAAVDWLRTKGLATAAKKSSRTAAEGLVGVSVEGTKGAAVEVNSETDFVAKNDQFQDFVRTVTQLALTAGDDVAALAGAGYP-------------------GGGTVAEKLTSNIATIGENQTLRRAKVVEVSKGTVV-PYVHNAAVPGLGKIGVLVALE---GDAPVAEMETVGKQIAMHIAAAFP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_ERYLH (Elongation factor Ts OS=Erythrobacter litoralis (strain HTCC2594) GN=tsf PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.065e-23
Identity = 76/211 (36.02%), Postives = 114/211 (54.03%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K+LRE + A M D K AL +   D+EAA+  LR +G     KKSSRTA EGL+ +A   +K   +E+N ETDFV++N+ FQ             + V +  +    +  + +E LK   D+P  G   TV + +T   A +GEN ++RR   ++ S   VV  Y+H +    LG+I  L++LE     +S D L+ +G +L MHI A  P
Sbjct:    9 VKKLREMSGAGMMDAKKALEETGGDLEAAVDALRAKGLAAVQKKSSRTAAEGLVGVAVEGTKGVAVEVNSETDFVAKNDQFQ-------------DFVRKTTAVALTIDGDDVEALKA-ADYPDGG---TVTDKLTNNVATIGENQQVRRMKTVTVSQ-GVVVPYVHNAVAPNLGKIGVLVALE---SDASADVLEPLGKQLAMHIAAAFP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BRUSU (Elongation factor Ts OS=Brucella suis GN=tsf PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.065e-23
Identity = 73/214 (34.11%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLE-VGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +L+K+LR+ T A M D K AL   +  IEAA+  LR +G   A KK+ RTA EGL+ +A + +KA V+E+N ETDFV+RN+ FQ               ++Q             +G    + +  + G+ TV  A  +  A +GEN+  RR   LS     VV+TY+H     GLG++  L+++E  GD  ++    +  G ++ MH+ A  P
Sbjct:    6 SLVKELRDLTGAGMMDCKAALAATEGKIEAAVDWLRAKGIAKADKKAGRTAAEGLVGVAASGNKAVVVEVNSETDFVARNDAFQ----------ELVRKIAQAALS--------TDGSSEAVANANVDGK-TVTEAAKDAVATIGENISFRRSAALSVPQ-GVVATYIHNGVADGLGKLGVLVAIETAGDAEAA----QAFGRQVAMHVAAVNP 195          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BRUSI (Elongation factor Ts OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=tsf PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.065e-23
Identity = 73/214 (34.11%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLE-VGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +L+K+LR+ T A M D K AL   +  IEAA+  LR +G   A KK+ RTA EGL+ +A + +KA V+E+N ETDFV+RN+ FQ               ++Q             +G    + +  + G+ TV  A  +  A +GEN+  RR   LS     VV+TY+H     GLG++  L+++E  GD  ++    +  G ++ MH+ A  P
Sbjct:    6 SLVKELRDLTGAGMMDCKAALAATEGKIEAAVDWLRAKGIAKADKKAGRTAAEGLVGVAASGNKAVVVEVNSETDFVARNDAFQ----------ELVRKIAQAALS--------TDGSSEAVANANVDGK-TVTEAAKDAVATIGENISFRRSAALSVPQ-GVVATYIHNGVADGLGKLGVLVAIETAGDAEAA----QAFGRQVAMHVAAVNP 195          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BRUO2 (Elongation factor Ts OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=tsf PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.065e-23
Identity = 73/214 (34.11%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLE-VGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +L+K+LR+ T A M D K AL   +  IEAA+  LR +G   A KK+ RTA EGL+ +A + +KA V+E+N ETDFV+RN+ FQ               ++Q             +G    + +  + G+ TV  A  +  A +GEN+  RR   LS     VV+TY+H     GLG++  L+++E  GD  ++    +  G ++ MH+ A  P
Sbjct:    6 SLVKELRDLTGAGMMDCKAALAATEGKIEAAVDWLRAKGIAKADKKAGRTAAEGLVGVAASGNKAVVVEVNSETDFVARNDAFQ----------ELVRKIAQAALS--------TDGSSEAVANANVDGK-TVTEAAKDAVATIGENISFRRSAALSVPQ-GVVATYIHNGVADGLGKLGVLVAIETAGDAEAA----QAFGRQVAMHVAAVNP 195          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_BRAJA1.070e-2336.24Elongation factor Ts OS=Bradyrhizobium japonicum G... [more]
EFTS_OCHA41.397e-2334.58Elongation factor Ts OS=Ochrobactrum anthropi (str... [more]
EFTS_SPHAL1.825e-2333.64Elongation factor Ts OS=Sphingopyxis alaskensis GN... [more]
EFTS_DINSH1.825e-2334.91Elongation factor Ts OS=Dinoroseobacter shibae (st... [more]
EFTS_METSB3.113e-2338.21Elongation factor Ts OS=Methylocella silvestris (s... [more]
EFTS_SPHWW4.065e-2334.43Elongation factor Ts OS=Sphingomonas wittichii (st... [more]
EFTS_ERYLH4.065e-2336.02Elongation factor Ts OS=Erythrobacter litoralis (s... [more]
EFTS_BRUSU4.065e-2334.11Elongation factor Ts OS=Brucella suis GN=tsf PE=3 ... [more]
EFTS_BRUSI4.065e-2334.11Elongation factor Ts OS=Brucella suis (strain ATCC... [more]
EFTS_BRUO24.065e-2334.11Elongation factor Ts OS=Brucella ovis (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
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