EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_PROM4 (Elongation factor Ts OS=Prochlorococcus marinus (strain MIT 9211) GN=tsf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 57/184 (30.98%), Postives = 83/184 (45.11%), Query Frame = 1 
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPV-----------GPEYLEGLKLNLDHPKIGG--------------------ETTVQNAITEVAAIMGENVKLRR 552
            L+K+LR++T A M D K ALV+ D D+E A++ LR++G   A KKS R A EG +   +        ++ELNCETDFV+R E+FQ              NV        PV           G + L G    +    + G                      TV+  + +VA  +GEN+++RR
Sbjct:    8 LVKELRDKTGAGMMDCKKALVESDADMEKAVEWLRQKGISSAEKKSGRVAAEGAIGSYIHTGSRVGVLLELNCETDFVARGELFQGLLRDISMQIAACPNVEFVAVDDIPVEVSDKEKSIEMGRDDLSGKPDQIKEKIVAGRISKRLKELALIEQPFIRDTSITVEQLVKQVAGQIGENLRIRR 191
[Close]
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_GUITH (Elongation factor Ts, chloroplastic OS=Guillardia theta GN=tsf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQ 348
            +K+LRE+TSA M D K AL +C+ D E A++ L+++G V A+KK++R ATEG++   +        ++ELNCETDFV+R   FQ
Sbjct:   10 VKELRERTSAGMMDCKKALQECNGDFEKAVETLKQKGLVSAAKKAARVATEGIIESYIHMGGKLGILVELNCETDFVARRPEFQ 93
[Close]
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BURPS (Elongation factor Ts OS=Burkholderia pseudomallei GN=tsf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++ +LR +T APM + K AL + D D+  A + LR +    ASK +SR   EG++A     +  A++ELNCETDFV++N+ F              + V++  +   P     L  L L+       G+T  +  +  V  I GEN+ +RR      S+   ++TYLH S    +    G                ++VG ++ MH+ A KP
Sbjct:    7 SMVAELRAKTDAPMMECKKALTEADGDMAKAEELLRVKLGNKASKAASRVTAEGVVASFVGANAGALVELNCETDFVAKNDDFN----------AFAKTVAELVATQNPADVAALSALPLD-------GKTVDEVRLALVGKI-GENISIRRFVRFETSNK--LATYLHGSRIGVIVEYTG--------------AQEQVGKDVAMHVAAMKP 185
[Close]
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BURP6 (Elongation factor Ts OS=Burkholderia pseudomallei (strain 668) GN=tsf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++ +LR +T APM + K AL + D D+  A + LR +    ASK +SR   EG++A     +  A++ELNCETDFV++N+ F              + V++  +   P     L  L L+       G+T  +  +  V  I GEN+ +RR      S+   ++TYLH S    +    G                ++VG ++ MH+ A KP
Sbjct:    7 SMVAELRAKTDAPMMECKKALTEADGDMAKAEELLRVKLGNKASKAASRVTAEGVVASFVGANAGALVELNCETDFVAKNDDFN----------AFAKTVAELVATQNPADVAALSALPLD-------GKTVDEVRLALVGKI-GENISIRRFVRFETSNK--LATYLHGSRIGVIVEYTG--------------AQEQVGKDVAMHVAAMKP 185
[Close]
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BURP1 (Elongation factor Ts OS=Burkholderia pseudomallei (strain 1710b) GN=tsf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++ +LR +T APM + K AL + D D+  A + LR +    ASK +SR   EG++A     +  A++ELNCETDFV++N+ F              + V++  +   P     L  L L+       G+T  +  +  V  I GEN+ +RR      S+   ++TYLH S    +    G                ++VG ++ MH+ A KP
Sbjct:    7 SMVAELRAKTDAPMMECKKALTEADGDMAKAEELLRVKLGNKASKAASRVTAEGVVASFVGANAGALVELNCETDFVAKNDDFN----------AFAKTVAELVATQNPADVAALSALPLD-------GKTVDEVRLALVGKI-GENISIRRFVRFETSNK--LATYLHGSRIGVIVEYTG--------------AQEQVGKDVAMHVAAMKP 185
[Close]
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BURP0 (Elongation factor Ts OS=Burkholderia pseudomallei (strain 1106a) GN=tsf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++ +LR +T APM + K AL + D D+  A + LR +    ASK +SR   EG++A     +  A++ELNCETDFV++N+ F              + V++  +   P     L  L L+       G+T  +  +  V  I GEN+ +RR      S+   ++TYLH S    +    G                ++VG ++ MH+ A KP
Sbjct:    7 SMVAELRAKTDAPMMECKKALTEADGDMAKAEELLRVKLGNKASKAASRVTAEGVVASFVGANAGALVELNCETDFVAKNDDFN----------AFAKTVAELVATQNPADVAALSALPLD-------GKTVDEVRLALVGKI-GENISIRRFVRFETSNK--LATYLHGSRIGVIVEYTG--------------AQEQVGKDVAMHVAAMKP 185
[Close]
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BURMS (Elongation factor Ts OS=Burkholderia mallei (strain SAVP1) GN=tsf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++ +LR +T APM + K AL + D D+  A + LR +    ASK +SR   EG++A     +  A++ELNCETDFV++N+ F              + V++  +   P     L  L L+       G+T  +  +  V  I GEN+ +RR      S+   ++TYLH S    +    G                ++VG ++ MH+ A KP
Sbjct:    7 SMVAELRAKTDAPMMECKKALTEADGDMAKAEELLRVKLGNKASKAASRVTAEGVVASFVGANAGALVELNCETDFVAKNDDFN----------AFAKTVAELVATQNPADVAALSALPLD-------GKTVDEVRLALVGKI-GENISIRRFVRFETSNK--LATYLHGSRIGVIVEYTG--------------AQEQVGKDVAMHVAAMKP 185
[Close]
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BURMA (Elongation factor Ts OS=Burkholderia mallei GN=tsf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++ +LR +T APM + K AL + D D+  A + LR +    ASK +SR   EG++A     +  A++ELNCETDFV++N+ F              + V++  +   P     L  L L+       G+T  +  +  V  I GEN+ +RR      S+   ++TYLH S    +    G                ++VG ++ MH+ A KP
Sbjct:    7 SMVAELRAKTDAPMMECKKALTEADGDMAKAEELLRVKLGNKASKAASRVTAEGVVASFVGANAGALVELNCETDFVAKNDDFN----------AFAKTVAELVATQNPADVAALSALPLD-------GKTVDEVRLALVGKI-GENISIRRFVRFETSNK--LATYLHGSRIGVIVEYTG--------------AQEQVGKDVAMHVAAMKP 185
[Close]
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BURM9 (Elongation factor Ts OS=Burkholderia mallei (strain NCTC 10229) GN=tsf PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++ +LR +T APM + K AL + D D+  A + LR +    ASK +SR   EG++A     +  A++ELNCETDFV++N+ F              + V++  +   P     L  L L+       G+T  +  +  V  I GEN+ +RR      S+   ++TYLH S    +    G                ++VG ++ MH+ A KP
Sbjct:    7 SMVAELRAKTDAPMMECKKALTEADGDMAKAEELLRVKLGNKASKAASRVTAEGVVASFVGANAGALVELNCETDFVAKNDDFN----------AFAKTVAELVATQNPADVAALSALPLD-------GKTVDEVRLALVGKI-GENISIRRFVRFETSNK--LATYLHGSRIGVIVEYTG--------------AQEQVGKDVAMHVAAMKP 185
[Close]
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BURM7 (Elongation factor Ts OS=Burkholderia mallei (strain NCTC 10247) GN=tsf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++ +LR +T APM + K AL + D D+  A + LR +    ASK +SR   EG++A     +  A++ELNCETDFV++N+ F              + V++  +   P     L  L L+       G+T  +  +  V  I GEN+ +RR      S+   ++TYLH S    +    G                ++VG ++ MH+ A KP
Sbjct:    7 SMVAELRAKTDAPMMECKKALTEADGDMAKAEELLRVKLGNKASKAASRVTAEGVVASFVGANAGALVELNCETDFVAKNDDFN----------AFAKTVAELVATQNPADVAALSALPLD-------GKTVDEVRLALVGKI-GENISIRRFVRFETSNK--LATYLHGSRIGVIVEYTG--------------AQEQVGKDVAMHVAAMKP 185
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_PROM41.712e-1330.98Elongation factor Ts OS=Prochlorococcus marinus (s... [more]
EFTS_GUITH1.712e-1346.43Elongation factor Ts, chloroplastic OS=Guillardia ... [more]
EFTS_BURPS1.712e-1329.11Elongation factor Ts OS=Burkholderia pseudomallei ... [more]
EFTS_BURP61.712e-1329.11Elongation factor Ts OS=Burkholderia pseudomallei ... [more]
EFTS_BURP11.712e-1329.11Elongation factor Ts OS=Burkholderia pseudomallei ... [more]
EFTS_BURP01.712e-1329.11Elongation factor Ts OS=Burkholderia pseudomallei ... [more]
EFTS_BURMS1.712e-1329.11Elongation factor Ts OS=Burkholderia mallei (strai... [more]
EFTS_BURMA1.712e-1329.11Elongation factor Ts OS=Burkholderia mallei GN=tsf... [more]
EFTS_BURM91.712e-1329.11Elongation factor Ts OS=Burkholderia mallei (strai... [more]
EFTS_BURM71.712e-1329.11Elongation factor Ts OS=Burkholderia mallei (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
back to top