EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_VIBHB (Elongation factor Ts OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=tsf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.981e-13
Identity = 61/221 (27.60%), Postives = 100/221 (45.25%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAI---MGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    L+K+LRE+T A M + K ALV+ + DIE A++ +RK G   A+KK+   A EG + + +    A ++E+NC+TDFV+++  F                              + + + L+    K   E  V     E  A+   +GEN+ +RR   +  ++   +++Y H       G   G++    GD     + LK V     MH+ A KP
Sbjct:    2 ATVTAALVKELRERTGAGMMECKKALVEANADIELAIENMRKSGAAKAAKKAGNVAAEGAIIIKEENGVAVLLEVNCQTDFVAKDGNF----------------------------TAFADKVALDALATKATAEELVAKFEEERVALVAKIGENINIRRVAYVEGTA---IASYRH-------GEKIGVVVAGEGDA----ETLKHV----AMHVAASKP 176          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_SYNPX (Elongation factor Ts OS=Synechococcus sp. (strain WH8102) GN=tsf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.981e-13
Identity = 57/190 (30.00%), Postives = 85/190 (44.74%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFP-----------VGPEYLEG----LKLNLDHPKIG----------------GETTVQNAITEVAAIMGENVKLRR 552
            A     L+K LR++T A M D K AL   D D   A++ LR++G   A KKS RTA EG ++  +        +IE+NCETDFV+R ++FQ              NV    +   P           +G + L+G    +K+ +   +IG                   TV   + + A  +GENV++RR
Sbjct:    2 AAVSAKLVKDLRDKTGAGMMDCKKALAATDGDANKAVEWLRQKGIASAEKKSGRTAAEGAISSYIHTGSRVGVLIEINCETDFVARGDMFQELLRDVSMQVAACPNVEYVSTDDIPDEIREREKAIEMGRDDLDGKPEQMKVKIVEGRIGKRLKELALMEQPFIKDSSITVTELVKQTAGKIGENVQVRR 191          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_KLEP7 (Elongation factor Ts OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=tsf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.981e-13
Identity = 56/213 (26.29%), Postives = 102/213 (47.89%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +L+K+LRE+T A M D K AL + + DIE A++ +RK G + A+KK+   A +G++      +   ++E+NC+TDFV+++  FQ             + +S             +E LK   +  ++            + A +GEN+ +RR   ++    +V+ +Y H +      RI  L++ +  D        + +  +L MH+ A KP
Sbjct:    7 SLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIEGNYGYILEVNCQTDFVAKDGGFQAFADKVLDAAVAGK-ISD------------VEVLKAQFEEERVA-----------LVAKIGENINIRR---IAVLEGDVLGSYQHGA------RIGVLVAAKGAD--------EELVKQLAMHVAASKP 178          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_KLEP3 (Elongation factor Ts OS=Klebsiella pneumoniae (strain 342) GN=tsf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.981e-13
Identity = 56/213 (26.29%), Postives = 102/213 (47.89%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +L+K+LRE+T A M D K AL + + DIE A++ +RK G + A+KK+   A +G++      +   ++E+NC+TDFV+++  FQ             + +S             +E LK   +  ++            + A +GEN+ +RR   ++    +V+ +Y H +      RI  L++ +  D        + +  +L MH+ A KP
Sbjct:    7 SLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIEGNYGYILEVNCQTDFVAKDGGFQAFADKVLDAAVAGK-ISD------------VEVLKAQFEEERVA-----------LVAKIGENINIRR---IAVLEGDVLGSYQHGA------RIGVLVAAKGAD--------EELVKQLAMHVAASKP 178          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_ANATD (Elongation factor Ts OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tsf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.981e-13
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQ 348
            ++K+LRE+T A M D K AL D   D++ A++ LR+RG   A+KK+SR A EG++   +  N     ++E+NCETDFV+RNE F+
Sbjct:    6 MVKELREKTGAGMMDCKKALEDAGGDMDKAIELLRERGLAKAAKKASRVAAEGIVESYIHGNGRIGVLVEINCETDFVARNEEFR 90          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_SHEHH (Elongation factor Ts OS=Shewanella halifaxensis (strain HAW-EB4) GN=tsf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIF 345
            +K+LR++T A M D K AL + + DIE A+  +RK G   A+KK+   A EG + + Q E  AA++E+NC+TDFV+++  F
Sbjct:    8 VKELRDRTGAGMMDCKKALTETNGDIELAIDNMRKSGAAKAAKKAGNIAAEGAILIKQGEGYAALLEVNCQTDFVAKDSNF 88          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_SHEAM (Elongation factor Ts OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tsf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13
Identity = 62/212 (29.25%), Postives = 97/212 (45.75%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LRE+T A M D K AL + + DIE A+  +RK G   A+KK+   A EG + + Q     A++E+NC+TDFV+++  F                V +  +     G   +E LK   +  ++            + A +GEN+ +RR   +     E V+ Y H       G   G+    V  G++  + LK     L MH+ A KP
Sbjct:    7 LVKELRERTGAGMMDCKKALEETNGDIELAIDNMRKSGAAKAAKKAGNIAAEGTILIKQGAGFTALLEVNCQTDFVAKDSNF----------LAFANQVLEVAA----AGKVSVEDLKAQFEEARVA-----------LVAKIGENINVRR---VEYIDGENVAAYRH-------GDRIGV----VVTGTADEETLK----HLAMHVAASKP 175          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_PROMS (Elongation factor Ts OS=Prochlorococcus marinus (strain AS9601) GN=tsf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13
Identity = 59/184 (32.07%), Postives = 85/184 (46.20%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFP-----------VGPEYLEG---------------LKLN----LDHPKI-GGETTVQNAITEVAAIMGENVKLRR 552
            L+K LR++T A M D K AL + + +++ AL+ LRK+G   A KKS R A EG +   +        ++ELNCETDFV+R +IFQ              NV        P           +G + L G                +LN    L  P I     TV++ + + AA +GEN+K+RR
Sbjct:    8 LVKDLRDKTGAGMMDCKKALNETEGNLDKALEWLRKKGIASAEKKSGRVAAEGSIGSYIHTGSRVGVLLELNCETDFVARGDIFQSLLKDVSMQVAACPNVEYVSIDEIPEDVVEKEKQIEMGRDDLSGKPEQIKEKIVEGRIAKRLNELVLLSQPYIKDSSLTVEDLVKQAAAKIGENIKVRR 191          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_PROM0 (Elongation factor Ts OS=Prochlorococcus marinus (strain MIT 9301) GN=tsf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13
Identity = 59/184 (32.07%), Postives = 85/184 (46.20%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFP-----------VGPEYLEG---------------LKLN----LDHPKI-GGETTVQNAITEVAAIMGENVKLRR 552
            L+K LR++T A M D K AL + + +++ AL+ LRK+G   A KKS R A EG +   +        ++ELNCETDFV+R +IFQ              NV        P           +G + L G                +LN    L  P I     TV++ + + AA +GEN+K+RR
Sbjct:    8 LVKDLRDKTGAGMMDCKKALNETEGNLDKALEWLRKKGIASAEKKSGRVAAEGSIGSYIHTGSRVGVLLELNCETDFVARGDIFQSLLKDVSMQVAACPNVEYVSIDEIPEEVVEKEKQIEMGRDDLSGKPEQIKEKIVEGRIAKRLNELVLLSQPYIKDSSLTVEDLVKQAAAKIGENIKVRR 191          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BURS3 (Elongation factor Ts OS=Burkholderia sp. (strain 383) GN=tsf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13
Identity = 61/213 (28.64%), Postives = 99/213 (46.48%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++ +LR +T APM + K AL + D D+  A + LR +    ASK +SR   EG++A     +  +++ELNCETDFV++N+ F              + V++  +   P     L  L L          +TV      +   +GENV +RR   +   +   ++TYLH    + +G I      E           ++VG ++ MHI A KP
Sbjct:    7 SMVAELRAKTDAPMMECKKALTEADGDLAKAEELLRVKLGNKASKAASRVTAEGVVASFVGGNAGSLVELNCETDFVAKNDDF----------LAFSKTVAELVATQNPADVAALSALPLE--------GSTVDAVRLALVGKIGENVSIRR--FVRFETANKIATYLH---GARIGVIVEYTGAE-----------EQVGKDVAMHIAAMKP 185          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_VIBHB4.981e-1327.60Elongation factor Ts OS=Vibrio harveyi (strain ATC... [more]
EFTS_SYNPX4.981e-1330.00Elongation factor Ts OS=Synechococcus sp. (strain ... [more]
EFTS_KLEP74.981e-1326.29Elongation factor Ts OS=Klebsiella pneumoniae subs... [more]
EFTS_KLEP34.981e-1326.29Elongation factor Ts OS=Klebsiella pneumoniae (str... [more]
EFTS_ANATD4.981e-1345.88Elongation factor Ts OS=Anaerocellum thermophilum ... [more]
EFTS_SHEHH6.506e-1343.21Elongation factor Ts OS=Shewanella halifaxensis (s... [more]
EFTS_SHEAM6.506e-1329.25Elongation factor Ts OS=Shewanella amazonensis (st... [more]
EFTS_PROMS6.506e-1332.07Elongation factor Ts OS=Prochlorococcus marinus (s... [more]
EFTS_PROM06.506e-1332.07Elongation factor Ts OS=Prochlorococcus marinus (s... [more]
EFTS_BURS36.506e-1328.64Elongation factor Ts OS=Burkholderia sp. (strain 3... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
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