EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BRASO (Elongation factor Ts OS=Bradyrhizobium sp. (strain ORS278) GN=tsf PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.635e-22
Identity = 76/212 (35.85%), Postives = 108/212 (50.94%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE T A M D K AL +   D++AA   LRK+G   A+KK+ R A EGL+    +  K  V+E+N ETDFV+RNE FQ               V         VG + +E +K      K+ G  TV+ AI +  A +GEN  LRR   L  S   VV++Y+H +   G G++  +++LE        D L  +G +L MH+ A  P
Sbjct:    8 MVKDLRESTGAGMMDCKAALTETGGDMQAAQDWLRKKGLSKAAKKAGRVAAEGLIGALTSGKKGVVVEVNSETDFVARNEHFQGL-------------VKMIAQVALDVGAD-VEKIKA----AKV-GSITVEAAIADSIATIGENQSLRRAAALEVSE-GVVASYVHGAVIEGAGKLGVIVALE---SPGKTDELAALGRQLAMHVAAANP 196          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_NOVAD (Elongation factor Ts OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=tsf PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.442e-22
Identity = 76/211 (36.02%), Postives = 112/211 (53.08%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K LRE+T A M D K AL +   D EAA+  LR +G   A+KKSSRTA EGL+ +A + +K   +E+N ETDFV++N+ FQ             + V +            +E LK    +P  G   TV + +T   A +GEN +LRR     A S  +V  Y+H +  + LG+I  L++LE     ++ D L+ +G ++ MHI A  P
Sbjct:    8 VKNLRERTGAGMMDCKKALDESGGDFEAAVDALRAKGLAAAAKKSSRTAAEGLVGVAVSGTKGVALEVNSETDFVAKNDQFQ-------------DFVRKATEVALNTAAADVEALKA-AAYPDGG---TVADKLTNNVATIGENQQLRR-IKHVAVSNGIVVPYMHNAAATNLGKIGVLVALE---SEAAADKLEALGKQIAMHIAAAFP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_EHRCR (Elongation factor Ts OS=Ehrlichia chaffeensis (strain Arkansas) GN=tsf PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.870e-22
Identity = 71/215 (33.02%), Postives = 117/215 (54.42%), Query Frame = 1
Query:   94 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEY-LEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +N +K+LR  T A + D K AL  C  DIE A   LR++G   A KKS++  ++GL+A+  N ++ A++E+N ETDFV+RNE FQ                      L  +  +Y +E ++  L H  + G T++ + I    A++GEN+ L +   LS ++  VV  Y+H+   + LG+I  +++LE    ++  D L  +  ++ MHIVA +P
Sbjct:    5 INAVKELRNLTGAGVGDCKEALNSCGGDIEKAKNYLREQGIAKAYKKSTKDVSDGLVAVHVNGNQGAILEVNSETDFVARNEKFQKLVL-----------------NLVSLANQYAVEDIEDFLKHEYVSG-TSIHDEIMTNIAVIGENIHLNKIGYLSVNA-GVVGGYIHSPVVNNLGKIGAIVALE---STADNDKLNVLARQIAMHIVAARP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_BACSK (Elongation factor Ts OS=Bacillus clausii (strain KSM-K16) GN=tsf PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.870e-22
Identity = 74/213 (34.74%), Postives = 109/213 (51.17%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +++K+LRE+T A M D K ALV+ D D+E A+  LR++G   A KK+ R A EGL ++    +KA ++E+N ETDFV++NE FQ               V++    +    P  +E     L  P  GG  TVQ+ I    A +GE + LRR  ++     +V  +YLH       GRI  L  +    GSSS   L +   ++ MH+ A  P
Sbjct:    6 SMVKELREKTGAGMMDCKKALVEVDGDMEKAIDYLREKGIAKAEKKADRVAAEGLASVVTEGNKAVILEVNSETDFVAKNENFQAL-------------VTELAEHILAEEPADVEAA---LAQPFKGGSETVQDHINTAIAKIGEKLSLRRFTVVEKEDADVFGSYLHMG-----GRIGVLTVI----GSSSDQELAK---DIAMHVAAINP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHOSK (Elongation factor Ts OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=tsf PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.001e-21
Identity = 69/212 (32.55%), Postives = 107/212 (50.47%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE T A M D K AL + D D+EAA+  LR +G   A+KK+ RTA EGL+ +  +      +E+N ETDFV++N  FQ             +++               E LK       +GG+ TV+  + E  A++GEN+ LRR   +S  S   V+ Y+H +   GLG+I  L++++  D          +  ++ MHI A  P
Sbjct:    7 MVKELRESTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKAGRTAAEGLVGVCVDGGTGVAVEVNSETDFVAKNADFQSMVTGFTKAALTVDDI---------------EALKA----ADMGGK-TVETTLQETIAVIGENMTLRRMAKISGDS---VAAYVHNAAADGLGKIGVLVAVKGADNG--------IAKQVAMHIAATNP 187          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHOS4 (Elongation factor Ts OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=tsf PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.001e-21
Identity = 69/212 (32.55%), Postives = 107/212 (50.47%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE T A M D K AL + D D+EAA+  LR +G   A+KK+ RTA EGL+ +  +      +E+N ETDFV++N  FQ             +++               E LK       +GG+ TV+  + E  A++GEN+ LRR   +S  S   V+ Y+H +   GLG+I  L++++  D          +  ++ MHI A  P
Sbjct:    7 MVKELRESTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKAGRTAAEGLVGVCVDGGTGVAVEVNSETDFVAKNADFQSMVTGFTKAALTVDDI---------------EALKA----ADMGGK-TVETTLQETIAVIGENMTLRRMAKISGDS---VAAYVHNAAADGLGKIGVLVAVKGADNG--------IAKQVAMHIAATNP 187          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHOS1 (Elongation factor Ts OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=tsf PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.001e-21
Identity = 69/212 (32.55%), Postives = 107/212 (50.47%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE T A M D K AL + D D+EAA+  LR +G   A+KK+ RTA EGL+ +  +      +E+N ETDFV++N  FQ             +++               E LK       +GG+ TV+  + E  A++GEN+ LRR   +S  S   V+ Y+H +   GLG+I  L++++  D          +  ++ MHI A  P
Sbjct:    7 MVKELRESTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKAGRTAAEGLVGVCVDGGTGVAVEVNSETDFVAKNADFQSMVTGFTKAALTVDDI---------------EALKA----ADMGGK-TVETTLQETIAVIGENMTLRRMAKISGDS---VAAYVHNAAADGLGKIGVLVAVKGADNG--------IAKQVAMHIAATNP 187          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_NITWN (Elongation factor Ts OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=tsf PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.001e-21
Identity = 70/220 (31.82%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   82 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIG--GETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            AT    ++K+LRE T   M D K AL + + D++AA+  LRK+G   A+KK+ R A EGL+ +  + +K  V+E+N ETDFV+RNE FQ                     GL  +  +    +  +++  K    G  TV   I++  A +GEN+ LRR   L      +V+ Y+H +   G G++  +++LE    + + D L  +G ++ MHI +  P
Sbjct:    2 ATITAAMVKELREITGVGMMDCKQALTENNGDMQAAIDWLRKKGLSKAAKKAGRVAAEGLIGVVTSGNKGVVVEVNSETDFVARNEQFQ---------------------GLVKMVAQVALSVGADVEVIKAAEVGNATVATTISDAIATIGENMTLRRANSLEVPK-GIVAGYVHNAVIDGAGKLGVIVALE---SAGNADELAALGRQVAMHIASANP 196          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_PARDP (Elongation factor Ts OS=Paracoccus denitrificans (strain Pd 1222) GN=tsf PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.308e-21
Identity = 71/212 (33.49%), Postives = 109/212 (51.42%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE T A M D K AL + + D+EAA+  LR +G   A+KKS R A EGL+ +A    +   +ELN ETDFV++N  FQ              NV+   +       E L+   LN           V + +T+  A +GEN+ LRR   L A   + + +Y+H +   G+G+I  L++L+ GD + +    + +G ++ MHI A  P
Sbjct:    7 MVKDLRETTGAGMMDAKKALTETNGDMEAAIDWLRTKGLAKAAKKSGRVAAEGLVGVAVRAGRGVAVELNSETDFVAKNADFQ-------QLVRDITNVALDAA----TDVEVLKATHLN--------GRPVDDVLTDAIARIGENMTLRR---LHALEGDTIVSYVHNAAAEGMGKIGVLVALK-GDAAKA----QEIGKQIAMHIAATNP 191          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_ZYMMO (Elongation factor Ts OS=Zymomonas mobilis GN=tsf PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.708e-21
Identity = 74/211 (35.07%), Postives = 110/211 (52.13%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K LRE+T A M D K AL + + ++EAA+  LR +G   A+KKS R A EGL+ +  + +K AV+E+N ETDFV++NE FQ               V + GS +  +             HP  G   +V + +T   A +GEN  LRR  LL   +  VV  Y+H     G+G+I  L++LE     +  D L+ +G ++ MH+ A  P
Sbjct:    9 VKALRERTGAGMMDCKKALNEANGEMEAAVDWLRAKGLAAAAKKSGRQAAEGLVGVMIDGTKGAVLEVNSETDFVAKNEKFQ------DFVKGVTALVLEHGSDIDTLS---------KAPHPAGG---SVNDVLTANIATIGENQALRRAALLEVEN-GVVVPYIHNQVAPGVGKIGVLVALE---SEAPSDFLESLGKQIAMHVAAATP 197          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_BRASO2.635e-2235.85Elongation factor Ts OS=Bradyrhizobium sp. (strain... [more]
EFTS_NOVAD3.442e-2236.02Elongation factor Ts OS=Novosphingobium aromaticiv... [more]
EFTS_EHRCR5.870e-2233.02Elongation factor Ts OS=Ehrlichia chaffeensis (str... [more]
EFTS_BACSK5.870e-2234.74Elongation factor Ts OS=Bacillus clausii (strain K... [more]
EFTS_RHOSK1.001e-2132.55Elongation factor Ts OS=Rhodobacter sphaeroides (s... [more]
EFTS_RHOS41.001e-2132.55Elongation factor Ts OS=Rhodobacter sphaeroides (s... [more]
EFTS_RHOS11.001e-2132.55Elongation factor Ts OS=Rhodobacter sphaeroides (s... [more]
EFTS_NITWN1.001e-2131.82Elongation factor Ts OS=Nitrobacter winogradskyi (... [more]
EFTS_PARDP1.308e-2133.49Elongation factor Ts OS=Paracoccus denitrificans (... [more]
EFTS_ZYMMO1.708e-2135.07Elongation factor Ts OS=Zymomonas mobilis GN=tsf P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
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