EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_DICDI (Elongation factor Ts, mitochondrial OS=Dictyostelium discoideum GN=tsfm PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.913e-21
Identity = 70/252 (27.78%), Postives = 129/252 (51.19%), Query Frame = 1
Query:   46 LISRNFSDQAPAATE-QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALA--QNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSG----------LFPVGPEYLEGLKLNL-DHPKIGGETTVQNAITEVAAIMGENVKLRRGFLL------SASSPEVVSTYLH--TSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L   NF  Q+ +  +    L+ QLR++T +P+++ K AL   + D++ A+K L ++GK  A K  SR + EG++++       KA ++E+N ETDFVSR +IF+               +S P SG          L P   E +  +K+N+ +   +  E T++++I  + + + EN+ +RR   +      + +S   +S+Y H  TS +  +GR+  ++  E     ++ + LK   ++L +HIV+  P
Sbjct:   31 LKKNNFCTQSTSEVKVPTELVVQLRKKTQSPVQECKKALQASNNDMDGAIKWLLEKGKATAEKLKSRVSAEGIISVLVDSGSGKAVILEMNSETDFVSRGDIFR-----NLARDISKATLSNPISGGKLAENGILELDPTQVENIYPIKINITNEDGVAEEMTIKDSIVRIVSKLRENIVIRRASFIQPLNNNNNNSKSYISSYAHDSTSEKKDVGRLGSIVQFEYQGDCNNMNSLKEFANQLAIHIVSNSP 277          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_EHRRG (Elongation factor Ts OS=Ehrlichia ruminantium (strain Gardel) GN=tsf PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.805e-21
Identity = 70/214 (32.71%), Postives = 109/214 (50.93%), Query Frame = 1
Query:   94 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +N IK+LR+ T A + D K AL  C+ DIE A   LR++G   A KKS++  ++GL+A+  + +K A++E+N ETDFV+RNE FQ             E                +E ++ +    +    T + + I    A++GEN+ L +   LS SS  VV  Y+H      LG++  +++LE        + LK    ++ MHIVA KP
Sbjct:    5 INAIKELRDLTGAGVGDCKDALTSCNGDIEKAKTYLREQGIAKAYKKSNKDVSDGLVAICIDGNKGAILEVNSETDFVARNEKFQKLVLNLAFLANQYE----------------IENIE-DFLKCEYSNNTNINDEIMSNIAVIGENIHLNKIGCLSVSS-GVVCGYIHNPIVDNLGKVGAIVALE---SKCDVEKLKIFARQIAMHIVATKP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_LISW6 (Elongation factor Ts OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=tsf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.970e-21
Identity = 73/213 (34.27%), Postives = 112/213 (52.58%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLE-GLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K ALV+ + D+E A+  LR++G   A+KKS R A+EG+  +  NE  A V+E+N ETDFV++N+ FQ             + V      +  V P+ LE  LK  + + +     +VQ+ ITE    +GEN+ LRR  +   +       Y+H +     GRI G+L+L  G   ++      V  ++ MHI A  P
Sbjct:    8 MVKELREKTGAGMMDCKKALVETEGDMEKAIDYLREKGIAKAAKKSDRVASEGMTHVISNEKHAVVLEVNAETDFVAKNDNFQ-------------QLVDALAKQILAVRPDSLEDALKTEMPNGQ-----SVQDYITEAITKIGENISLRRFEVKEKADNSAFGEYIHMN-----GRI-GVLTLLEGTTDTT------VAKDVAMHIAAINP 190          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBL (Elongation factor Ts OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tsf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.970e-21
Identity = 72/214 (33.64%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL +CD D+E A++ LR++G   A+KKS R A EG+++  ++++    +++E NCETDFVS NE+F               N+S+  +       E L   K   D  K+     V++ ITE+ A +GEN+ LRR   LS     V+++Y+H     G GRI  L+ L      +    L  +  ++ M + A  P
Sbjct:    6 MVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIVEFNCETDFVSVNELF----------VELANNLSKQAAFSNVSTAEELLEEKYIADESKL-----VKDVITELIAKLGENMNLRRIAKLSVDK-GVITSYIH-----GGGRIGVLVKLACEKEDAK---LAEIAKDVAMQVAATNP 195          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBK (Elongation factor Ts OS=Clostridium botulinum (strain Okra / Type B1) GN=tsf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.970e-21
Identity = 72/214 (33.64%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL +CD D+E A++ LR++G   A+KKS R A EG+++  ++++    +++E NCETDFVS NE+F               N+S+  +       E L   K   D  K+     V++ ITE+ A +GEN+ LRR   LS     V+++Y+H     G GRI  L+ L      +    L  +  ++ M + A  P
Sbjct:    6 MVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIVEFNCETDFVSVNELF----------VELANNLSKQAAFSNVSTAEELLEEKYIADESKL-----VKDVITELIAKLGENMNLRRIAKLSVDK-GVITSYIH-----GGGRIGVLVKLACEKEDAK---LAEIAKDVAMQVAATNP 195          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBJ (Elongation factor Ts OS=Clostridium botulinum (strain Kyoto / Type A2) GN=tsf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.970e-21
Identity = 72/214 (33.64%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL +CD D+E A++ LR++G   A+KKS R A EG+++  ++++    +++E NCETDFVS NE+F               N+S+  +       E L   K   D  K+     V++ ITE+ A +GEN+ LRR   LS     V+++Y+H     G GRI  L+ L      +    L  +  ++ M + A  P
Sbjct:    6 MVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIVEFNCETDFVSVNELF----------VELANNLSKQAAFSNVSTAEELLEEKYIADESKL-----VKDVITELIAKLGENMNLRRIAKLSVDK-GVITSYIH-----GGGRIGVLVKLACEKEDAK---LAEIAKDVAMQVAATNP 195          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBH (Elongation factor Ts OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tsf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.970e-21
Identity = 72/214 (33.64%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL +CD D+E A++ LR++G   A+KKS R A EG+++  ++++    +++E NCETDFVS NE+F               N+S+  +       E L   K   D  K+     V++ ITE+ A +GEN+ LRR   LS     V+++Y+H     G GRI  L+ L      +    L  +  ++ M + A  P
Sbjct:    6 MVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIVEFNCETDFVSVNELF----------VELANNLSKQAAFSNVSTAEELLEEKYIADESKL-----VKDVITELIAKLGENMNLRRIAKLSVDK-GVITSYIH-----GGGRIGVLVKLACEKEDAK---LAEIAKDVAMQVAATNP 195          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CLOB1 (Elongation factor Ts OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tsf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.970e-21
Identity = 72/214 (33.64%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL +CD D+E A++ LR++G   A+KKS R A EG+++  ++++    +++E NCETDFVS NE+F               N+S+  +       E L   K   D  K+     V++ ITE+ A +GEN+ LRR   LS     V+++Y+H     G GRI  L+ L      +    L  +  ++ M + A  P
Sbjct:    6 MVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIVEFNCETDFVSVNELF----------VELANNLSKQAAFSNVSTAEELLEEKYIADESKL-----VKDVITELIAKLGENMNLRRIAKLSVDK-GVITSYIH-----GGGRIGVLVKLACEKEDAK---LAEIAKDVAMQVAATNP 195          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBM (Elongation factor Ts OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tsf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.490e-21
Identity = 72/214 (33.64%), Postives = 111/214 (51.87%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL +CD D+E A++ LR++G   A+KKS R A EG+++  ++++    +++E NCETDFVS NE+F               N+S+  +       E L   K   D  K+     V++ ITE+ A +GEN+ LRR   LS     V+ +Y+H     G GRI  L+ L      +    L  +  ++ M + A  P
Sbjct:    6 MVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIVEFNCETDFVSVNELF----------VELANNLSKQAAFSNVSTAEELLEEKYIADESKL-----VKDVITELIAKLGENMNLRRIAKLSVDK-GVIKSYIH-----GGGRIGVLVKLACEKEDAK---LAEIAKDVAMQVAATNP 195          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBB (Elongation factor Ts OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tsf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.490e-21
Identity = 74/213 (34.74%), Postives = 108/213 (50.70%), Query Frame = 1
Query:  103 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +K+LRE+T A M D K AL + D DIE A++ LR++G   A+KKS R A EGL+   +++++   A++ELNCETDFV+ NE F                       L  +           L + K   E T+Q A+T + A +GEN+ +RR F+  A    VV +Y+H     G GRI  L+ +     S +   ++ V  EL M I A  P
Sbjct:    7 VKELRERTGAGMMDCKKALTETDGDIEKAVEVLREKGLAAAAKKSGRVAAEGLVKTYISEDKKSGAIVELNCETDFVAANEDFIAF-----------------ADALAKIATSTSATTVEELVNEKFDSEATIQEALTGLIARLGENMTVRR-FVKFAVDNGVVKSYIH-----GGGRIGVLVEVACDVESPA---VEEVAKELCMQIAAANP 193          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_DICDI2.913e-2127.78Elongation factor Ts, mitochondrial OS=Dictyosteli... [more]
EFTS_EHRRG3.805e-2132.71Elongation factor Ts OS=Ehrlichia ruminantium (str... [more]
EFTS_LISW64.970e-2134.27Elongation factor Ts OS=Listeria welshimeri serova... [more]
EFTS_CLOBL4.970e-2133.64Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOBK4.970e-2133.64Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOBJ4.970e-2133.64Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOBH4.970e-2133.64Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOB14.970e-2133.64Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOBM6.490e-2133.64Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOBB6.490e-2134.74Elongation factor Ts OS=Clostridium botulinum (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
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