EY659553

Overview
NameEY659553
Unique NameEY659553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659553_ssr744 microsatellite EY659553_ssr744:744..759. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659553_ssr268 microsatellite EY659553_ssr268:268..285. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659553_ssr17 microsatellite EY659553_ssr17:17..28. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659553_ssr49 microsatellite EY659553_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659553 vs. ExPASy Swiss-Prot
Match: CML39_ARATH (Calcium-binding protein CML39 OS=Arabidopsis thaliana GN=CML39 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 45/156 (28.85%), Postives = 77/156 (49.36%), Query Frame = 1
Query:   85 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 552
            DL+ +F  +D N DG +S EEL    + +G   + EE EA V+   +  D  L   +  +                      D+ + +E+   + +AF ++  +G+  IT   L+ +L +LG  + +++ DC+ MI  +D N+DGVL F+EF  MM
Sbjct:   22 DLEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGMLDINEFALLIKGN-----------------DEFTEEEKKRKIMEAFRMYIADGEDCITPGSLKMMLMKLG--ESRTTDDCKVMIQAFDLNADGVLSFDEFALMM 158          
BLAST of EY659553 vs. ExPASy Swiss-Prot
Match: CALL3_RAT (Calmodulin-like protein 3 OS=Rattus norvegicus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 46/163 (28.22%), Postives = 82/163 (50.31%), Query Frame = 1
Query:   85 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEK------PSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMML 555
            + +  F   D++GDG ++ +EL  V+  +G + T  EL+ +V +       ++ F EFL                            + D   +EEI +   AF VFD +G+GF+++ EL+ V+ RLG  ++ S ++   MI   DT+ DG +++EEF +M++
Sbjct:   12 EFKEAFSLFDKDGDGCITTQELGTVMRSLGQNPTEAELQDMVNEIDKDGNGTVDFPEFLTMMSR----------------------KMKDTDSEEEIRE---AFRVFDKDGNGFVSAAELRHVMTRLG--EKLSDEEVDEMIQAADTDGDGQVNYEEFVHMLV 147          
The following BLAST results are available for this feature:
BLAST of EY659553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CML39_ARATH4.252e-1128.85Calcium-binding protein CML39 OS=Arabidopsis thali... [more]
CALL3_RAT7.253e-1128.22Calmodulin-like protein 3 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-D09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659553 ID=EY659553; Name=EY659553; organism=Citrus sinensis; type=EST; length=884bp
ATTGTTTTTCTGGATTGTTAGTTAGTTAATCCCCATTATATATTATTGTC
ACTCACTCACAATATGGCTCCTCTTACCGCCAATGACTTGCAAAGAATTT
TCGAGAAGCTTGATCGAAATGGCGATGGCCTGGTGAGCTTGGAGGAACTC
AACTGGGTTCTTGAAAGAATTGGGGTACATTTTACCCTTGAAGAGCTTGA
AGCCCTAGTTGAAAAACCAAGCCTCTGCTTCGATGAATTCTTGTTCTTCT
GTGATTCCATCATATCGAATAATAATAATAATAATCCCAATGCTGCTGCT
GATGCTTCCCAGAATGCTGATGAAGCAGTTGATGATGACAGCGGCGACGA
AGAGATCAGTGATCTTTACAAAGCGTTCAGTGTGTTCGATGTGAATGGTG
ATGGATTCATTACAAGCGAAGAGCTTCAGAGTGTGTTGGCGAGACTCGGA
TTGTGGGATGAAAAAAGCAGCCAAGATTGCAGAAGCATGATTTACGTGTA
TGATACCAATTCTGATGGGGTTCTTGATTTTGAAGAATTCAAGAACATGA
TGCTTCGTAGTACTGTTTCTTAATTCGTTTATTAATTTCGCGCCTGTTAA
TCTTGACCTTGTTTTTTTTTTTTTTTTTTTATAATCTGTGAAATTATGTT
GATTATATGATGGTCGTAATTTGTTAGACCCGAGATCAACATAATTAGCC
GAGCTTATTAGATTATTTNGTGGTTCGTGTAATCTTATATATATGTGTGT
GTGTGTGTGTACGTATGATCCTTCAAATATGCGTTTCCTTGTGTAAAAAA
AAAAAAACCTATCATAANATCCATATCGGCGCGCCGTTTTATAGATCCAA
CTTACGTACCGTGCCTGCGAAGTTTAACTCTTTT
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