EY659551

Overview
NameEY659551
Unique NameEY659551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:436..1351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659551 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 3.127e-12
Identity = 70/223 (31.39%), Postives = 91/223 (40.81%), Query Frame = 2
Query:  233 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFA-ELKVKELKNGRLAMFSMFGFFVQAIVTGKGSIENL 763
            P +L G  PGD G+D  GLS   E             AKN                                  RE E+IH RWAML  LG +  E  +  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR                  FDPL LA + ++ A  LK  E+K+ RLAM S FG+ VQA+ TG+G++ +L
Sbjct:   60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGKVELD--GASYAG---LSLPFSITQLIWIEVILVGGAEFYR---NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267          
BLAST of EY659551 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.965e-12
Identity = 57/196 (29.08%), Postives = 77/196 (39.29%), Query Frame = 2
Query:  233 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSMFGFFVQA 730
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG+VE  R                                       FDPL LA          D ++   LK+ E+K+ RLAM +M  F+ +A
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA 244          
The following BLAST results are available for this feature:
BLAST of EY659551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB29_CHLRE3.127e-1231.39Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4B_SOLLC6.965e-1229.08Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659551 ID=EY659551; Name=EY659551; organism=Citrus sinensis; type=EST; length=916bp
TTCAGCTTCAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAACCTCTG
CTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAATCCAAT
GAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCATGAG
GAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCAGACCGCC
CAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGGT
GAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACCC
CGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGG
CAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAAT
GGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATT
CTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTC
AGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTTTGTT
GAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACT
TTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATC
AATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATG
TTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGGTC
CATTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCT
GGGCTTATGCCACTAACTTTTGTCCCGGAAAGTAAAGAACTCATGACTNG
ATGGTGTCTTTTTCAGCTGTACATTATTCTATGTATCGATGTGCCTTTGG
GGAAACTCTGTCATGA
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