EY659539

Overview
NameEY659539
Unique NameEY659539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY659539 vs. ExPASy Swiss-Prot
Match: PKSF_BACSU (Polyketide biosynthesis malonyl-ACP decarboxylase pksF OS=Bacillus subtilis GN=pksF PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.225e-13
Identity = 52/173 (30.06%), Postives = 82/173 (47.40%), Query Frame = 3 
Query:    3 EVCGILVMESSEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIANSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAITTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVV 521
            E CG LV+E  E A++RG    A   G ++  D +   DP  +G      I  +LE A + PE+++Y+N H T +  GD  E+ A++      S   +N TKS+           E I+ +  +    LHP+ N D+   + +   V      + +  A+S S GFGG N+ V
Sbjct:  236 ESCGALVIERKETALRRGLKPYAALSGWSIKLDGNRNPDPSLEG--EIHVIQKALERARLLPEDIDYINPHGTGSFIGDEIELKALRAC--RLSHAYINATKSITGHGLSAAGIVEIISVLLQMKKSALHPSRNLDH-PIDDSFHWVNEKSISYRIKNALSLSMGFGGMNTAV 403
The following BLAST results are available for this feature:
BLAST of EY659539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PKSF_BACSU2.225e-1330.06Polyketide biosynthesis malonyl-ACP decarboxylase ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659539 ID=EY659539; Name=EY659539; organism=Citrus sinensis; type=EST; length=939bp
GAGAGGTTTGTGGCATACTGGTTATGGAGAGCTCGGAGCATGCAATGAAA
AGAGGAGCTAACATAATTGCCGAGTATCTGGGAGGTGCGGTAACCTGTGA
TGCTCATCACATGACAGATCCAAGGTCAGATGGCCTCGGAGTTTCATCTT
GCATAGCCAATAGTTTAGAAGATGCAGGAGTTTCCCCTGAAGAGGTTAAC
TACGTGAATGCTCATGCAACATCCACATTAGCAGGGGATTTGGCTGAGGT
TAATGCAATTAAGAAGGTCTTCAAGGACACATCTGAAATGAAGATGAATG
GAACTAAGTCGATGATTGGACATGGGCTTGGGGCAGCTGGCGGATTGGAA
GCTATAACAACCATAAAAGCAATCACCACTGGCTGGTTGCATCCAACCCT
TAACCAAGATAACTTGGAGCCTGAGGTTACAATCGACACCGTTCCAAATG
TGAAGAAACAGCATCACGTTAACGTTGCTATCTCAAATTCATTTGGCTTT
GGTGGTCACAACTCTGTGGTGGTTTTTGCTCCCTTCTCACATAAATAAAC
TGTGGGCCAAAGAATTTCTCTATTTCAACCATTCCTTTAACAGAAAATTA
ATCATTGATTTGAGGCCTTAATTAACATTGCTTNAAAGCATGGGACGTAT
AAAGTGATGAAGAAATCATTAATGCTCTGACGAGTGATGAAGTCACAGTA
GCTTCTTTTGGCAATTCATTNCATCCATCACCATGCTCGAGTGAGGGCAC
ATTCTCTGGTGTTTCGATTTGAATAAATAACACTCATGTAACTNNCCCTA
TGTGGTCCTGGTTCGCCTGGATTCTAATTTCCACCCTAAAATAAATATTG
GGGCTTATTTTTGATGGGTAGATAACAAGGTTAAAGATGCCGCCTCAATA
AATCCAACCTGGTCCTGACCTAAAAAAAAAAAAAAAAAA
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