EY659536

Overview
NameEY659536
Unique NameEY659536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7645 contig Csv1_Contig7645:13..964. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659536 vs. ExPASy Swiss-Prot
Match: ARP4_ASHGO (Actin-related protein 4 OS=Ashbya gossypii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.965e-13
Identity = 47/167 (28.14%), Postives = 83/167 (49.70%), Query Frame = 1
Query:   73 EEVSALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMGQKDSYVGDEAQS-KRGILTLKYPIEHGIVTNWDDMDKIWHHTFYNELRVAPE*H-PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYE 567
            +E++A+V+D GS     G++G D P+A+ PS  G+          G+KD    +++    R    +   +++G V +W+  +K W     +ELR       P LLTE   N + NR+K  +++ E+ +  A Y+   A    +A GR T +V+D    V+   P+ +
Sbjct:   12 DEITAVVIDPGSFTTNIGYSGTDCPQAILPSCYGKYTE-------GEKDELFSEQSIGLPRKDYEIHNIVQNGEVVDWEKAEKQWDWAIRSELRFETNSGMPALLTEPIWNSEENRKKSLEVLLESMDFSACYLVPTATAVSFAMGRPTCLVVDIGHDVTSVCPVVD 171          
BLAST of EY659536 vs. ExPASy Swiss-Prot
Match: ARP5_DICDI (Actin-related protein 5 OS=Dictyostelium discoideum GN=arpE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.510e-12
Identity = 50/198 (25.25%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   88 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH-QGVMAGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMDKIWHHTFY-----NELRVAPE*HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA------SGRTTGIVLDSRDGVSHTVPIYECYALPHXXXXXXXXXXXXTDYLMKIL 645
            +++DNGS  C+AGFA D +P+ +F S+VG+ +     + G   K+   GD ++     LT+K P +  ++ +    + I+ + F+     NE+      +PVL+TE   NP   R+ M++++FE +N  ++   I ++ S Y        G    +++ S    +H   +                    TDYL K++
Sbjct:   33 IIIDNGSYQCRAGFANDISPKLIFRSLVGKVKSTSSPIVGNSLKE---GDISR-----LTIKSPFDSNLLVHPPSQESIFDYIFHKFGIENEIE-----NPVLITEPTSNPTFCRKYMSELLFECYNIKSVVYGIDSLFSFYGQRDQFKDGGKNSLIIGSSFNTTHIYNVQNYNVSHQQTKRINIGGGASTDYLRKLI 217          
BLAST of EY659536 vs. ExPASy Swiss-Prot
Match: ARP5_YEAST (Actin-related protein 5 OS=Saccharomyces cerevisiae GN=ARP5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 46/169 (27.22%), Postives = 88/169 (52.07%), Query Frame = 1
Query:   82 SALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMDKIWHHTFYNELRVAPE*---HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY---ASGRTTGIVLDSRDGVSHTVPIYE 567
            S + +D GS   +AGF     P  +FP+ + + R +     + +  ++VG++    + + +  + P +   VTNW+  ++I  +TF++ L V P+    +P+LLTE     ++ R    QI+FET+N P +   I ++ S Y    SG  TG+V+      ++ +P+ +
Sbjct:   38 SPIAIDFGSSKLRAGFVNHATPTHIFPNALTKFRDRK----LNKNFTFVGNDTLLDQAVRSQSRSPFDGPFVTNWNLTEEILDYTFHH-LGVVPDNGIPNPILLTERLATVQSQRTNWYQILFETYNVPGVTFGIDSLFSFYNYNPSGNKTGLVISCGHEDTNVIPVVD 201          
BLAST of EY659536 vs. ExPASy Swiss-Prot
Match: ARP6_NEUCR (Actin-like protein arp-6 OS=Neurospora crassa GN=arp-6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.775e-11
Identity = 58/218 (26.61%), Postives = 96/218 (44.04%), Query Frame = 1
Query:   82 SALVVDNGSGMCKAGFAGDDA----PRAVFPSIVGRPRHQGVMAGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMDKIWHHTFYNE---LRVAPE*HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY----ASGRTTGIVLDS--------RDGVSHT--VPIYECYALPHXXXXXXXXXXXXTDYLMKILTERGYSL 666
            + LV+DNG+   KAGF  DD     PR + P+ + R RH+ +         YVG E +  +    L  + P+E G + NW+   +IW   F+++    +  P    ++LTE P +  + +    QI+FE +   + Y  +  V + Y    +  RT    +DS          G SHT   PI +   L              T+YL ++L+ R + +
Sbjct:   20 TTLVLDNGADTIKAGFVSDDKSDGKPR-IIPNCLARDRHRKI---------YVGSELEKCKDFSELAFRRPVEKGFIVNWEAQKEIWDREFFDDKAAQKCDPSDTRLILTEQPNSLPSLQTHCDQIVFEEYGFASYYRGLGPVFNAYRDIQSIFRTPQSTIDSPAQVILLIDSGYSHTTVTPILQGRPLHPAIRRLDVGGKLMTNYLTRLLSVRHFDM 227          
BLAST of EY659536 vs. ExPASy Swiss-Prot
Match: ARP4_CANGA (Actin-related protein 4 OS=Candida glabrata GN=ARP4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.624e-11
Identity = 43/177 (24.29%), Postives = 77/177 (43.50%), Query Frame = 1
Query:   73 EEVSALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMGQKDS-------YVGDEAQSKRGILTLKYPIEHGIVTNWDDMDKIWHHTFYNELRV-APE*HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYECYAL 579
            +E++A+++D GS     G+AG D P+++ PS  G              +        +        R    +K  +E+G V +WD   + W     NEL + +    P +LTE   N K NR K  +I+ E     A Y+   +    +A+GR   +++D    ++   P+ +  +L
Sbjct:   12 DEITAVIIDPGSYTTNIGYAGTDCPQSILPSSFGEIHEAEESTSEDNTEKTRKTRKVFSEQSIPIPRPDYEVKRVVENGQVCDWDSAVEQWSWALRNELHIESNRGIPAMLTEPLWNSKENRSKSLEILLEGMEFEACYLTATSTAVSFATGRPNSLIVDIGHDIASVTPVIDGMSL 188          
The following BLAST results are available for this feature:
BLAST of EY659536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ARP4_ASHGO2.965e-1328.14Actin-related protein 4 OS=Ashbya gossypii GN=ARP4... [more]
ARP5_DICDI2.510e-1225.25Actin-related protein 5 OS=Dictyostelium discoideu... [more]
ARP5_YEAST5.592e-1227.22Actin-related protein 5 OS=Saccharomyces cerevisia... [more]
ARP6_NEUCR2.775e-1126.61Actin-like protein arp-6 OS=Neurospora crassa GN=a... [more]
ARP4_CANGA3.624e-1124.29Actin-related protein 4 OS=Candida glabrata GN=ARP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-C03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659536 ID=EY659536; Name=EY659536; organism=Citrus sinensis; type=EST; length=950bp
CTCAAGTTTTGTTTGTCCCAGTGTTCCACGATTCTCTAACGTACTAATTT
CAACAAATTCAAAATGTGTGACGAAGAAGTATCAGCACTCGTTGTCGACA
ATGGATCCGGTATGTGCAAAGCCGGTTTTGCCGGTGATGATGCTCCCAGA
GCCGTATTCCCCTCAATCGTCGGTCGCCCAAGGCATCAGGGTGTCATGGC
TGGTATGGGACAAAAAGACAGTTATGTTGGAGATGAAGCTCAATCTAAGA
GAGGTATCCTTACCTTGAAATACCCCATCGAACACGGTATTGTCACAAAC
TGGGACGATATGGATAAGATCTGGCATCACACCTTCTACAATGAACTCCG
AGTAGCGCCAGAATAACACCCTGTCCTCTTGACAGAAGCTCCCCTGAACC
CAAAAGCTAACAGAGAAAAGATGACCCAAATCATGTTTGAAACCTTCAAC
ACACCCGCCATGTATGTAGCTATCCAAGCTGTTCTCTCTCTGTATGCTTC
TGGTCGTACCACTGGTATCGTTCTTGATTCACGAGATGGTGTNTCCCACA
CAGTGCCAATCTATGAATGCTATGCCTTACCTCATGCTATNCTACGTTTG
GACTTGGCTGGTCGTGACTTGACCGACTACCTCATGAAGATCCTTACAGA
AAGAGGGTACAGTCTCACAGCCACAGCTGAAAGAGAACATCGCCGCGATA
TCATAGATAATTATGGTTTGTAGCTTTTTAACTTTGACAGGAAATGGNCA
CCGCTGCTTCCTCAAGCTCCCTAAAAAATCCTATGATTTGCCTGATGGTC
AAGGAATACAATTGAAACCAAAGGTTCCGTTGCCAAGAGCCCTATCCAAC
CTCATTCTTGGGTTTGGAACTGGGGGGGCCCTGGAACCCTCCCACCCATT
TTGAATATGGAGGTGTATTCGGAAAATTGGATGCCACACATCCCTCTTGA
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