EY659531

Overview
NameEY659531
Unique NameEY659531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.812e-11
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:  118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHER 309
            D+ LH+ P+NM N+N+ + LE+IK +L E L  L HAP VQ Q IP D+   ++ +  ED  ++
Sbjct:  340 DFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEDDPDK 403

HSP 2 Score: 28.8758 bits (63), Expect = 1.812e-11
Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 3 
Query:   51 VALGVKVADKMPHHDSYDYFGP 116
            VAL  ++ +++P++D ++YFGP
Sbjct:  318 VALDTEIPNELPYNDYFEYFGP 339
[Close]
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.053e-11
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHER 309
            D+ LH+ P+NM N+N+ + LE+IK +L E L  L HAP VQ Q IP DS    + E  E+  ++
Sbjct:  340 DFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDSVHDDSGEEDEEDPDK 403

HSP 2 Score: 28.1054 bits (61), Expect = 3.053e-11
Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 3 
Query:   51 VALGVKVADKMPHHDSYDYFGP 116
            VAL  ++ +++P++D ++YFGP
Sbjct:  318 VALDSEIPNELPYNDYFEYFGP 339
[Close]
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC2_MOUSE (Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 6.673e-11
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:  118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHE 306
            D+ LH+ P+NM N+N+ + +E+IK +L E L  L HAP VQ Q IP D+     D   EDG +
Sbjct:  341 DFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDA--VHEDSGDEDGED 401

HSP 2 Score: 28.4906 bits (62), Expect = 6.673e-11
Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 3 
Query:   51 VALGVKVADKMPHHDSYDYFGP 116
            VAL  ++ +++P++D ++YFGP
Sbjct:  319 VALDCEIPNELPYNDYFEYFGP 340
[Close]
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC2_HUMAN (Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 6.673e-11
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:  118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHE 306
            D+ LH+ P+NM N+N+ + +E+IK +L E L  L HAP VQ Q IP D+     D   EDG +
Sbjct:  341 DFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDA--VHEDSGDEDGED 401

HSP 2 Score: 28.4906 bits (62), Expect = 6.673e-11
Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 3 
Query:   51 VALGVKVADKMPHHDSYDYFGP 116
            VAL  ++ +++P++D ++YFGP
Sbjct:  319 VALDCEIPNELPYNDYFEYFGP 340
[Close]
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC2_CHICK (Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 6.673e-11
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:  118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHE 306
            D+ LH+ P+NM N+N+ + +E+IK +L E L  L HAP VQ Q IP D+     D   EDG +
Sbjct:  341 DFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDA--VHEDSGDEDGED 401

HSP 2 Score: 28.4906 bits (62), Expect = 6.673e-11
Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 3 
Query:   51 VALGVKVADKMPHHDSYDYFGP 116
            VAL  ++ +++P++D ++YFGP
Sbjct:  319 VALDCEIPNELPYNDYFEYFGP 340
The following BLAST results are available for this feature:
BLAST of EY659531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HDAC1_HUMAN1.812e-1142.19Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]
HDA1B_XENLA3.053e-1143.75Probable histone deacetylase 1-B OS=Xenopus laevis... [more]
HDAC2_MOUSE6.673e-1144.44Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=... [more]
HDAC2_HUMAN6.673e-1144.44Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=... [more]
HDAC2_CHICK6.673e-1144.44Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659531 ID=EY659531; Name=EY659531; organism=Citrus sinensis; type=EST; length=859bp
GCTTCGGTNCCGGNATTCCCGCCTCGACCCACGCGTCCGACGATATTTGA
GTTGCACTTGGAGTAAAGGTCGCTGACAAGATGCCACACCATGATTCTTA
TGACTATTTTGGTCCTGGACTATACTCTTCATGTTGGTCCCAATAACATG
GAGAATAAAAATTCACGCCAGTTGCTTGAAGAAATAAAGAATAAGCTTCT
CGAATATCTCTCAAAGCTTCAACATGCACCCAGTGTCCAGTTCCAAGAAA
TACCACCTGATTCTGAACTTGCACAAGCGGATGAACATCAAGAAGATGGC
CATGAAAGATGGGATCCACATTCTGACATGGGTGTTGATGATGAACGAAA
GTGCCTACCAAACAAAGTTAACAGAGATGCAGTTGCACCTGGACAAAAAC
ATCGGGAAGGCCTTAAAGGAATGGCCGACCAAGCTAGACGCTTCGACATG
ATTGCAGACGATTCTATAAGCACAGGGGGTCTATATATGAGTTCAATGCC
AATTGATGAACCGATCATCAAAGTTGAACAATAAAACATGAGCAAGGCAT
CTGATCACATGTACCCGCATTCGTAACTAAACTGTATGTGAACATCGACA
TCTGCTATACAAATTATGTGTTGTAGACATGAAAACCTGATTGGTTTGGC
CAAACATCGATTTGCAAGTTATATNTCTCCAATCACACTAATGTATTGAA
CTATAAAACTTCTGTCTTCACACATGTCAAACTTATTTTCTCTGATATTT
ATCCTCGTGCTCGGGCGCAAGAGTAGTTTATGTCTTGAGAATACATATCC
TNGTTATTAAATAGTTCTGGACTGTAATACCAGATTTCCTTTAAGATAAA
AAAAAAAAA
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