EY659523

Overview
NameEY659523
Unique NameEY659523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_SOLTU (50S ribosomal protein L33, chloroplastic OS=Solanum tuberosum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VRN  +  SRG+S YITQ NRH+TP R EL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRFELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_SOLLC (50S ribosomal protein L33, chloroplastic OS=Solanum lycopersicum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VRN  +  SRG+S YITQ NRH+TP R EL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRFELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_SOLBU (50S ribosomal protein L33, chloroplastic OS=Solanum bulbocastanum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VRN  +  SRG+S YITQ NRH+TP R EL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRFELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_MANES (50S ribosomal protein L33, chloroplastic OS=Manihot esculenta GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD+ +RVI+ECT   RN  N +S G+S YITQ NRH+TP RLEL KFC YCYKHT+HGEI K
Sbjct:    1 MAKGKDIRIRVILECTTCTRNSVNKKSTGISRYITQKNRHNTPSRLELRKFCRYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_COFAR (50S ribosomal protein L33, chloroplastic OS=Coffea arabica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VRN  N  S G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTVILECTDCVRNSVNKVSTGISRYITQKNRHNTPNRLELKKFCPYCYKHTVHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_AETGR (50S ribosomal protein L33, chloroplastic OS=Aethionema grandiflora GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN    ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTNCVRNDIKKESPGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_FAGEA (50S ribosomal protein L33, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl33 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.028e-20
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + VI+ECT  VR   N ESRG+S YITQ NR +TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDARVSVILECTSCVRKNVNKESRGISRYITQKNRRNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CUCSA (50S ribosomal protein L33, chloroplastic OS=Cucumis sativus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.028e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + VI+ECT  VRNG N +S G+S YITQ NRH+TP RLEL KFCP CYKHT+HGEI K
Sbjct:    1 MAKGKDARVTVILECTRCVRNGVNKQSIGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CALFG (50S ribosomal protein L33, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.028e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT   RNG N ESRG+S YITQ NRH+TP RLEL KFC YCYKHT+H EI K
Sbjct:    1 MAKGKDVRVIIILECTGCARNGLNKESRGISRYITQKNRHNTPSRLELKKFCSYCYKHTIHAEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ARATH (50S ribosomal protein L33, chloroplastic OS=Arabidopsis thaliana GN=rpl33 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.028e-20
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN    E+ G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKEAAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
The following BLAST results are available for this feature:
BLAST of EY659523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK33_SOLTU6.912e-2068.1850S ribosomal protein L33, chloroplastic OS=Solanu... [more]
RK33_SOLLC6.912e-2068.1850S ribosomal protein L33, chloroplastic OS=Solanu... [more]
RK33_SOLBU6.912e-2068.1850S ribosomal protein L33, chloroplastic OS=Solanu... [more]
RK33_MANES6.912e-2066.6750S ribosomal protein L33, chloroplastic OS=Maniho... [more]
RK33_COFAR6.912e-2069.7050S ribosomal protein L33, chloroplastic OS=Coffea... [more]
RK33_AETGR6.912e-2068.1850S ribosomal protein L33, chloroplastic OS=Aethio... [more]
RK33_FAGEA9.028e-2068.1850S ribosomal protein L33, chloroplastic OS=Fagopy... [more]
RK33_CUCSA9.028e-2068.1850S ribosomal protein L33, chloroplastic OS=Cucumi... [more]
RK33_CALFG9.028e-2068.1850S ribosomal protein L33, chloroplastic OS=Calyca... [more]
RK33_ARATH9.028e-2066.6750S ribosomal protein L33, chloroplastic OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659523 ID=EY659523; Name=EY659523; organism=Citrus sinensis; type=EST; length=916bp
GCAAAGATTACGGAAATCGAAATATGGGGTGGGGCAGAGTATTCTCCACT
ACAATATCCTTAGATGAAATACTGGACTGCGATTCAGCAATATAGTTAGA
AATTCTTGTGTCACTTATTATTTTTTATTGTGAGATCCTATTTATTGACT
ATATTGATTGCAATAAAATCTTTATTTCATAAGTTTTCTTGGAGTGGTTA
GCGACTTCTATTTTTTTGTGCCGACGCTTCTTATTCGTAGCGGGTCGGAA
AATAAAATAGCTGGGTGAATCAAAAACCCCAATGAGGCTGATGGCCAACG
GTAAGGACGTCCTATTAAGGGTTATTGTGGAATGTACTATGAGAGTTCGA
AACGGTGCCAATGACGAATCAAGGGGTGTTTCCATATATATTACTCAGAA
TAATCGACACAGTACACCCATGCGATTGGAATTGATAAAATTCTGTCCCT
ATTGTTACAAGCATACACTTCATGGGGAGATAACAAAATAGATTGAGTCA
AGCCTGGTGCTTTTGTGCCACCCTTCCGAGGGACATGACATACTACTCTA
TATGTATATCTACATTATCTCATATATCTTAATGAGAACATATATATAAG
TGTATACATACCAGATGCTATGATCGATGCTATAAATCATTGTTTGATTT
CATCGAAATGAGACTCTACGGATAAGGAATAAACAAATTATGGATAGAAC
CAAGCGACTCATTGCTAAATGCAAGCGATATATGGGTAGGCGGTTGCCCA
CGATCCAATCGTGGATCGAATTGATATACAAACCTGACTTGATTAGTCGA
TTCCTATTGGACAGGGAAAATTTATCTAGGCGGCGAATAGATGGACTTCA
AGAGCACGATCATTCCTATTGCTATAAACAGGCTCGATTTATGTTGGTAC
TTTCTTATATGCCAAA
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