EY659523

Overview
NameEY659523
Unique NameEY659523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_LOBMA (50S ribosomal protein L33, chloroplastic OS=Lobularia maritima GN=rpl33 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN +  E  G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDSKKELAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ARAHI (50S ribosomal protein L33, chloroplastic OS=Arabis hirsuta GN=rpl33 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN    ES G+S YITQ NRH+TP RLEL KFCPYC+KHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCFKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_MORIN (50S ribosomal protein L33, chloroplastic OS=Morus indica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.011e-19
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + +I+ECT  +RN  N ESRG+S YITQ NRH+TP RLEL KFCP CYKHT+HGE+ K
Sbjct:    1 MAKGKDARVTIILECTSCLRNRVNKESRGISRYITQKNRHNTPSRLELRKFCPSCYKHTIHGELKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_IPOPU (50S ribosomal protein L33, chloroplastic OS=Ipomoea purpurea GN=rpl33 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.011e-19
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA  KDV + VI+ECT  VRNG N  S G+S YITQ NRH+TP  LEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKSKDVRVAVILECTSCVRNGVNKVSTGISRYITQKNRHNTPNPLELKKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ACOCL (50S ribosomal protein L33, chloroplastic OS=Acorus calamus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.627e-19
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  L VI+ECT  VRNG N ES G+S YITQ NRH+T  RLEL K+C YCYKHT+HGEI K
Sbjct:    1 MAKGKDARLTVILECTSCVRNGVNKESPGISRYITQKNRHNTSSRLELRKYCRYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_LEPVR (50S ribosomal protein L33, chloroplastic OS=Lepidium virginicum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.431e-19
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN    ES G+S YITQ NRH+TP RLEL KFC YCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCAYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_LACSA (50S ribosomal protein L33, chloroplastic OS=Lactuca sativa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.431e-19
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGAN--DESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + V++ECT  VRNG N    S G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGE+ K
Sbjct:    1 MAKGKDVRIPVLLECTACVRNGVNVNKASTGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEVKK 68          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_BARVE (50S ribosomal protein L33, chloroplastic OS=Barbarea verna GN=rpl33 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.480e-19
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN    ES G+S YITQ NRH+TP RLEL KFCPYC KHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCSKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_AETCO (50S ribosomal protein L33, chloroplastic OS=Aethionema cordifolium GN=rpl33 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.852e-19
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + + +ECT  VRN    E  G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTIFLECTSCVRNDIKKEFAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_PIPCE (50S ribosomal protein L33, chloroplastic OS=Piper cenocladum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.954e-18
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESR--GVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + V++ECT  VRNG N + +  GVS YITQ NRH+TP RLEL KFCPYC+KHT+HGEI K
Sbjct:    1 MAKGKDARVIVLLECTSCVRNGFNKQKKPSGVSRYITQRNRHNTPGRLELRKFCPYCHKHTIHGEIKK 68          
The following BLAST results are available for this feature:
BLAST of EY659523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK33_LOBMA1.179e-1966.6750S ribosomal protein L33, chloroplastic OS=Lobula... [more]
RK33_ARAHI1.179e-1966.6750S ribosomal protein L33, chloroplastic OS=Arabis... [more]
RK33_MORIN2.011e-1965.1550S ribosomal protein L33, chloroplastic OS=Morus ... [more]
RK33_IPOPU2.011e-1968.1850S ribosomal protein L33, chloroplastic OS=Ipomoe... [more]
RK33_ACOCL2.627e-1968.1850S ribosomal protein L33, chloroplastic OS=Acorus... [more]
RK33_LEPVR3.431e-1966.6750S ribosomal protein L33, chloroplastic OS=Lepidi... [more]
RK33_LACSA3.431e-1966.1850S ribosomal protein L33, chloroplastic OS=Lactuc... [more]
RK33_BARVE4.480e-1966.6750S ribosomal protein L33, chloroplastic OS=Barbar... [more]
RK33_AETCO5.852e-1965.1550S ribosomal protein L33, chloroplastic OS=Aethio... [more]
RK33_PIPCE4.954e-1864.7150S ribosomal protein L33, chloroplastic OS=Piper ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659523 ID=EY659523; Name=EY659523; organism=Citrus sinensis; type=EST; length=916bp
GCAAAGATTACGGAAATCGAAATATGGGGTGGGGCAGAGTATTCTCCACT
ACAATATCCTTAGATGAAATACTGGACTGCGATTCAGCAATATAGTTAGA
AATTCTTGTGTCACTTATTATTTTTTATTGTGAGATCCTATTTATTGACT
ATATTGATTGCAATAAAATCTTTATTTCATAAGTTTTCTTGGAGTGGTTA
GCGACTTCTATTTTTTTGTGCCGACGCTTCTTATTCGTAGCGGGTCGGAA
AATAAAATAGCTGGGTGAATCAAAAACCCCAATGAGGCTGATGGCCAACG
GTAAGGACGTCCTATTAAGGGTTATTGTGGAATGTACTATGAGAGTTCGA
AACGGTGCCAATGACGAATCAAGGGGTGTTTCCATATATATTACTCAGAA
TAATCGACACAGTACACCCATGCGATTGGAATTGATAAAATTCTGTCCCT
ATTGTTACAAGCATACACTTCATGGGGAGATAACAAAATAGATTGAGTCA
AGCCTGGTGCTTTTGTGCCACCCTTCCGAGGGACATGACATACTACTCTA
TATGTATATCTACATTATCTCATATATCTTAATGAGAACATATATATAAG
TGTATACATACCAGATGCTATGATCGATGCTATAAATCATTGTTTGATTT
CATCGAAATGAGACTCTACGGATAAGGAATAAACAAATTATGGATAGAAC
CAAGCGACTCATTGCTAAATGCAAGCGATATATGGGTAGGCGGTTGCCCA
CGATCCAATCGTGGATCGAATTGATATACAAACCTGACTTGATTAGTCGA
TTCCTATTGGACAGGGAAAATTTATCTAGGCGGCGAATAGATGGACTTCA
AGAGCACGATCATTCCTATTGCTATAAACAGGCTCGATTTATGTTGGTAC
TTTCTTATATGCCAAA
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