EY659523

Overview
NameEY659523
Unique NameEY659523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_NYMAL (50S ribosomal protein L33, chloroplastic OS=Nymphaea alba GN=rpl33 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.954e-18
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGAND--ESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            M  GK+  + VI+ECT  VRNGA+   ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MPKGKNPRVTVILECTSCVRNGADKKKESPGISRYITQKNRHNTPGRLELKKFCPYCYKHTIHGEIKK 68          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_OENPA (50S ribosomal protein L33, chloroplastic OS=Oenothera parviflora GN=rpl33 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.470e-18
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + VI+ECT  VR G   ES G+S YIT+ NRH+TP +LEL KFCPYCYK T+HGEI K
Sbjct:    1 MARGKDARVTVILECTNCVRGGVTKESTGISRYITEKNRHNTPGQLELKKFCPYCYKQTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_OENGL (50S ribosomal protein L33, chloroplastic OS=Oenothera glazioviana GN=rpl33 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.470e-18
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + VI+ECT  VR G   ES G+S YIT+ NRH+TP +LEL KFCPYCYK T+HGEI K
Sbjct:    1 MARGKDARVTVILECTNCVRGGVTKESTGISRYITEKNRHNTPGQLELKKFCPYCYKQTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_OENEH (50S ribosomal protein L33, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl33 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.470e-18
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + VI+ECT  VR G   ES G+S YIT+ NRH+TP +LEL KFCPYCYK T+HGEI K
Sbjct:    1 MARGKDARVTVILECTNCVRGGVTKESTGISRYITEKNRHNTPGQLELKKFCPYCYKQTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_OENBI (50S ribosomal protein L33, chloroplastic OS=Oenothera biennis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.470e-18
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + VI+ECT  VR G   ES G+S YIT+ NRH+TP +LEL KFCPYCYK T+HGEI K
Sbjct:    1 MARGKDARVTVILECTNCVRGGVTKESTGISRYITEKNRHNTPGQLELKKFCPYCYKQTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_OENAR (50S ribosomal protein L33, chloroplastic OS=Oenothera argillicola GN=rpl33 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.470e-18
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + VI+ECT  VR G   ES G+S YIT+ NRH+TP +LEL KFCPYCYK T+HGEI K
Sbjct:    1 MARGKDARVTVILECTNCVRGGVTKESTGISRYITEKNRHNTPGQLELKKFCPYCYKQTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CICAR (50S ribosomal protein L33, chloroplastic OS=Cicer arietinum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.450e-18
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD+ + VI+ECT   +   N ESRG+S YITQ NRH+TP RLEL KFCP+C KHT+H EI K
Sbjct:    1 MAKGKDIRITVILECTSCDKKSVNKESRGISRYITQKNRHNTPSRLELRKFCPFCCKHTIHAEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ORYSJ (50S ribosomal protein L33, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.104e-17
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI++C   VR GAN+ES G+S Y TQ NRH+TP +LEL KFC YC KHT+H EI K
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ORYSI (50S ribosomal protein L33, chloroplastic OS=Oryza sativa subsp. indica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.104e-17
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI++C   VR GAN+ES G+S Y TQ NRH+TP +LEL KFC YC KHT+H EI K
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ORYSA (50S ribosomal protein L33, chloroplastic OS=Oryza sativa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.104e-17
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI++C   VR GAN+ES G+S Y TQ NRH+TP +LEL KFC YC KHT+H EI K
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIKK 66          
The following BLAST results are available for this feature:
BLAST of EY659523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK33_NYMAL4.954e-1866.1850S ribosomal protein L33, chloroplastic OS=Nympha... [more]
RK33_OENPA6.470e-1863.6450S ribosomal protein L33, chloroplastic OS=Oenoth... [more]
RK33_OENGL6.470e-1863.6450S ribosomal protein L33, chloroplastic OS=Oenoth... [more]
RK33_OENEH6.470e-1863.6450S ribosomal protein L33, chloroplastic OS=Oenoth... [more]
RK33_OENBI6.470e-1863.6450S ribosomal protein L33, chloroplastic OS=Oenoth... [more]
RK33_OENAR6.470e-1863.6450S ribosomal protein L33, chloroplastic OS=Oenoth... [more]
RK33_CICAR8.450e-1862.1250S ribosomal protein L33, chloroplastic OS=Cicer ... [more]
RK33_ORYSJ1.104e-1763.6450S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_ORYSI1.104e-1763.6450S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_ORYSA1.104e-1763.6450S ribosomal protein L33, chloroplastic OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659523 ID=EY659523; Name=EY659523; organism=Citrus sinensis; type=EST; length=916bp
GCAAAGATTACGGAAATCGAAATATGGGGTGGGGCAGAGTATTCTCCACT
ACAATATCCTTAGATGAAATACTGGACTGCGATTCAGCAATATAGTTAGA
AATTCTTGTGTCACTTATTATTTTTTATTGTGAGATCCTATTTATTGACT
ATATTGATTGCAATAAAATCTTTATTTCATAAGTTTTCTTGGAGTGGTTA
GCGACTTCTATTTTTTTGTGCCGACGCTTCTTATTCGTAGCGGGTCGGAA
AATAAAATAGCTGGGTGAATCAAAAACCCCAATGAGGCTGATGGCCAACG
GTAAGGACGTCCTATTAAGGGTTATTGTGGAATGTACTATGAGAGTTCGA
AACGGTGCCAATGACGAATCAAGGGGTGTTTCCATATATATTACTCAGAA
TAATCGACACAGTACACCCATGCGATTGGAATTGATAAAATTCTGTCCCT
ATTGTTACAAGCATACACTTCATGGGGAGATAACAAAATAGATTGAGTCA
AGCCTGGTGCTTTTGTGCCACCCTTCCGAGGGACATGACATACTACTCTA
TATGTATATCTACATTATCTCATATATCTTAATGAGAACATATATATAAG
TGTATACATACCAGATGCTATGATCGATGCTATAAATCATTGTTTGATTT
CATCGAAATGAGACTCTACGGATAAGGAATAAACAAATTATGGATAGAAC
CAAGCGACTCATTGCTAAATGCAAGCGATATATGGGTAGGCGGTTGCCCA
CGATCCAATCGTGGATCGAATTGATATACAAACCTGACTTGATTAGTCGA
TTCCTATTGGACAGGGAAAATTTATCTAGGCGGCGAATAGATGGACTTCA
AGAGCACGATCATTCCTATTGCTATAAACAGGCTCGATTTATGTTGGTAC
TTTCTTATATGCCAAA
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