EY659523

Overview
NameEY659523
Unique NameEY659523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ORYNI (50S ribosomal protein L33, chloroplastic OS=Oryza nivara GN=rpl33 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.104e-17
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI++C   VR GAN+ES G+S Y TQ NRH+TP +LEL KFC YC KHT+H EI K
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_AMBTC (50S ribosomal protein L33, chloroplastic OS=Amborella trichopoda GN=rpl33 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.104e-17
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGAN--DESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  +RVI+ECT   RNGAN   ES G+S YIT+ NRH+TP RLEL KFCPYC KH +H EI K
Sbjct:    1 MAKGKDARVRVILECTSCTRNGANAKKESPGISRYITEKNRHNTPSRLELKKFCPYCSKHMIHAEIKK 68          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_DIOEL (50S ribosomal protein L33, chloroplastic OS=Dioscorea elephantipes GN=rpl33 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.194e-17
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +R+I+EC   VRNG N E  G+S YITQ +RH+TP RLEL K+C YC  HT+HGEI K
Sbjct:    1 MAKGKDVRVRIILECASCVRNGINKELPGISRYITQKSRHNTPNRLELRKYCHYCRTHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_WHEAT (50S ribosomal protein L33, chloroplastic OS=Triticum aestivum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.153e-17
Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VR GAN+ES G+S Y TQ NRH+TP +LE  KFC YC KHT H EI K
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_PHAAO (50S ribosomal protein L33, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl33 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.153e-17
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD+ + VI+ECT  VR G N E  G+S YITQ NRH+TP RLE  KFC YC K+T+HGEI K
Sbjct:    1 MAKGKDIRIIVILECTCCVRKGVNKELLGISRYITQKNRHNTPNRLEFRKFCRYCQKYTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_LOLPR (50S ribosomal protein L33, chloroplastic OS=Lolium perenne GN=rpl33 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.153e-17
Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VR GAN+ES G+S Y TQ NRH+TP +LE  KFC YC KHT H EI K
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_HORVU (50S ribosomal protein L33, chloroplastic OS=Hordeum vulgare GN=rpl33 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.153e-17
Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VR GAN+ES G+S Y TQ NRH+TP +LE  KFC YC KHT H EI K
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_AGRST (50S ribosomal protein L33, chloroplastic OS=Agrostis stolonifera GN=rpl33 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.153e-17
Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VR GAN+ES G+S Y TQ NRH+TP +LE  KFC YC KHT H EI K
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_SORBI (50S ribosomal protein L33, chloroplastic OS=Sorghum bicolor GN=rpl33 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.342e-17
Identity = 42/66 (63.64%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VR G N ES G+S Y TQ NRH+TP +LEL KFC YC KHT H EI K
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_SACOF (50S ribosomal protein L33, chloroplastic OS=Saccharum officinarum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.342e-17
Identity = 42/66 (63.64%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VR G N ES G+S Y TQ NRH+TP +LEL KFC YC KHT H EI K
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIKK 66          
The following BLAST results are available for this feature:
BLAST of EY659523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK33_ORYNI1.104e-1763.6450S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_AMBTC1.104e-1764.7150S ribosomal protein L33, chloroplastic OS=Ambore... [more]
RK33_DIOEL4.194e-1762.1250S ribosomal protein L33, chloroplastic OS=Diosco... [more]
RK33_WHEAT7.153e-1763.6450S ribosomal protein L33, chloroplastic OS=Tritic... [more]
RK33_PHAAO7.153e-1762.1250S ribosomal protein L33, chloroplastic OS=Phalae... [more]
RK33_LOLPR7.153e-1763.6450S ribosomal protein L33, chloroplastic OS=Lolium... [more]
RK33_HORVU7.153e-1763.6450S ribosomal protein L33, chloroplastic OS=Hordeu... [more]
RK33_AGRST7.153e-1763.6450S ribosomal protein L33, chloroplastic OS=Agrost... [more]
RK33_SORBI9.342e-1763.6450S ribosomal protein L33, chloroplastic OS=Sorghu... [more]
RK33_SACOF9.342e-1763.6450S ribosomal protein L33, chloroplastic OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659523 ID=EY659523; Name=EY659523; organism=Citrus sinensis; type=EST; length=916bp
GCAAAGATTACGGAAATCGAAATATGGGGTGGGGCAGAGTATTCTCCACT
ACAATATCCTTAGATGAAATACTGGACTGCGATTCAGCAATATAGTTAGA
AATTCTTGTGTCACTTATTATTTTTTATTGTGAGATCCTATTTATTGACT
ATATTGATTGCAATAAAATCTTTATTTCATAAGTTTTCTTGGAGTGGTTA
GCGACTTCTATTTTTTTGTGCCGACGCTTCTTATTCGTAGCGGGTCGGAA
AATAAAATAGCTGGGTGAATCAAAAACCCCAATGAGGCTGATGGCCAACG
GTAAGGACGTCCTATTAAGGGTTATTGTGGAATGTACTATGAGAGTTCGA
AACGGTGCCAATGACGAATCAAGGGGTGTTTCCATATATATTACTCAGAA
TAATCGACACAGTACACCCATGCGATTGGAATTGATAAAATTCTGTCCCT
ATTGTTACAAGCATACACTTCATGGGGAGATAACAAAATAGATTGAGTCA
AGCCTGGTGCTTTTGTGCCACCCTTCCGAGGGACATGACATACTACTCTA
TATGTATATCTACATTATCTCATATATCTTAATGAGAACATATATATAAG
TGTATACATACCAGATGCTATGATCGATGCTATAAATCATTGTTTGATTT
CATCGAAATGAGACTCTACGGATAAGGAATAAACAAATTATGGATAGAAC
CAAGCGACTCATTGCTAAATGCAAGCGATATATGGGTAGGCGGTTGCCCA
CGATCCAATCGTGGATCGAATTGATATACAAACCTGACTTGATTAGTCGA
TTCCTATTGGACAGGGAAAATTTATCTAGGCGGCGAATAGATGGACTTCA
AGAGCACGATCATTCCTATTGCTATAAACAGGCTCGATTTATGTTGGTAC
TTTCTTATATGCCAAA
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