EY659523

Overview
NameEY659523
Unique NameEY659523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CUSEX (50S ribosomal protein L33, plastid OS=Cuscuta exaltata GN=rpl33 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.695e-15
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGA--NDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEI 482
            MA  KDV + VI+ECT   +N    N  + G+S YITQ NRH+TP RLE  KFCP CYKHTLHGEI
Sbjct:    1 MAKNKDVRVTVILECTSCAQNDVHGNKVATGISRYITQKNRHNTPNRLEFQKFCPRCYKHTLHGEI 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_JASNU (50S ribosomal protein L33, chloroplastic OS=Jasminum nudiflorum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.142e-14
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  291 MANGKDV-LLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEI 482
            MA GKD   +RVI+ECT  VRN     SRGVS YITQ NRH+T  +LEL KFCPYC+KH +HGEI
Sbjct:    1 MAKGKDAPRVRVILECTGCVRNAV---SRGVSRYITQKNRHNTSKQLELRKFCPYCHKHMIHGEI 62          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CUSRE (50S ribosomal protein L33, plastid OS=Cuscuta reflexa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.142e-14
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDE--SRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA  K+V + VI+ECT   +N  N    + G+S YITQ NRH+TP RLE  KFCP CYKHTLHGEI K
Sbjct:    1 MAKTKNVRVTVILECTSCAQNNVNVNKVATGISRYITQKNRHNTPNRLEFKKFCPRCYKHTLHGEIKK 68          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_SOYBN (50S ribosomal protein L33, chloroplastic OS=Glycine max GN=rpl33 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.492e-14
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD+ + VI+ECT   +   N ES G+S YIT+ NR +TP RLEL KFCP C KHT+H EI K
Sbjct:    1 MAKGKDIRVIVILECTGCDKKSVNKESTGISRYITKKNRQNTPSRLELRKFCPRCCKHTIHAEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ZYGCR (50S ribosomal protein L33, chloroplastic OS=Zygnema circumcarinatum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.798e-13
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA  K++ + V +ECT    N +   SRG+S YITQ NR +TP RLEL KFCPYC  HT+H EI K
Sbjct:    1 MAKNKEIRINVTLECT-NCANNSQKSSRGISRYITQKNRRNTPNRLELNKFCPYCVGHTVHKEIKK 65          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_PINTH (50S ribosomal protein L33, chloroplastic OS=Pinus thunbergii GN=rpl33 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.396e-12
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA   D+ + + +ECT   ++       G+S Y T+ NR +TP+RLE  KFCPYCYKHT+HGEI K
Sbjct:    1 MAKSGDIRVTITLECTSCTQDSVYKRFPGISRYTTRKNRRNTPIRLESNKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_PINKO (50S ribosomal protein L33, chloroplastic OS=Pinus koraiensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.396e-12
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA   D+ + + +ECT   ++       G+S Y T+ NR +TP+RLE  KFCPYCYKHT+HGEI K
Sbjct:    1 MAKSGDIRVTITLECTSCTQDSVYKRFPGISRYTTRKNRRNTPIRLESNKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ANTFO (50S ribosomal protein L33, chloroplastic OS=Anthoceros formosae GN=rpl33 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.823e-12
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESR--GVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA  KD+ + + +ECT       NDE R  GVS Y+++ NR +TP RLEL KFCPYCYKH +H EI K
Sbjct:    1 MAKSKDIRIAITLECTSC---SENDEKRFSGVSRYVSEKNRRNTPTRLELKKFCPYCYKHKIHREIKK 65          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_PHYPA (50S ribosomal protein L33, chloroplastic OS=Physcomitrella patens GN=rpl33 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.049e-12
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA  KDV + + +ECT         +  GVS Y TQ NR +TP RLEL KFC YC KHT+H EI K
Sbjct:    1 MAKNKDVRVTITLECTNNCAQNNEKKKLGVSRYTTQKNRRNTPTRLELKKFCSYCNKHTIHKEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_PELHO (50S ribosomal protein L33, chloroplastic OS=Pelargonium hortorum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.543e-11
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDE----SRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEI 482
            MA GKD   +V +ECT  V+N  N++    S G+  Y+TQ N  +TP  LEL KFCPYC KHT+HGEI
Sbjct:    1 MAKGKDNRGKVTLECTGCVQNRVNNKKKKKSAGIYRYLTQKNPKNTPSPLELRKFCPYCNKHTIHGEI 68          
The following BLAST results are available for this feature:
BLAST of EY659523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK33_CUSEX6.695e-1560.6150S ribosomal protein L33, plastid OS=Cuscuta exal... [more]
RK33_JASNU1.142e-1464.6250S ribosomal protein L33, chloroplastic OS=Jasmin... [more]
RK33_CUSRE1.142e-1458.8250S ribosomal protein L33, plastid OS=Cuscuta refl... [more]
RK33_SOYBN1.492e-1457.5850S ribosomal protein L33, chloroplastic OS=Glycin... [more]
RK33_ZYGCR4.798e-1354.5550S ribosomal protein L33, chloroplastic OS=Zygnem... [more]
RK33_PINTH1.396e-1248.4850S ribosomal protein L33, chloroplastic OS=Pinus ... [more]
RK33_PINKO1.396e-1248.4850S ribosomal protein L33, chloroplastic OS=Pinus ... [more]
RK33_ANTFO1.823e-1252.9450S ribosomal protein L33, chloroplastic OS=Anthoc... [more]
RK33_PHYPA9.049e-1251.5250S ribosomal protein L33, chloroplastic OS=Physco... [more]
RK33_PELHO1.543e-1152.9450S ribosomal protein L33, chloroplastic OS=Pelarg... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659523 ID=EY659523; Name=EY659523; organism=Citrus sinensis; type=EST; length=916bp
GCAAAGATTACGGAAATCGAAATATGGGGTGGGGCAGAGTATTCTCCACT
ACAATATCCTTAGATGAAATACTGGACTGCGATTCAGCAATATAGTTAGA
AATTCTTGTGTCACTTATTATTTTTTATTGTGAGATCCTATTTATTGACT
ATATTGATTGCAATAAAATCTTTATTTCATAAGTTTTCTTGGAGTGGTTA
GCGACTTCTATTTTTTTGTGCCGACGCTTCTTATTCGTAGCGGGTCGGAA
AATAAAATAGCTGGGTGAATCAAAAACCCCAATGAGGCTGATGGCCAACG
GTAAGGACGTCCTATTAAGGGTTATTGTGGAATGTACTATGAGAGTTCGA
AACGGTGCCAATGACGAATCAAGGGGTGTTTCCATATATATTACTCAGAA
TAATCGACACAGTACACCCATGCGATTGGAATTGATAAAATTCTGTCCCT
ATTGTTACAAGCATACACTTCATGGGGAGATAACAAAATAGATTGAGTCA
AGCCTGGTGCTTTTGTGCCACCCTTCCGAGGGACATGACATACTACTCTA
TATGTATATCTACATTATCTCATATATCTTAATGAGAACATATATATAAG
TGTATACATACCAGATGCTATGATCGATGCTATAAATCATTGTTTGATTT
CATCGAAATGAGACTCTACGGATAAGGAATAAACAAATTATGGATAGAAC
CAAGCGACTCATTGCTAAATGCAAGCGATATATGGGTAGGCGGTTGCCCA
CGATCCAATCGTGGATCGAATTGATATACAAACCTGACTTGATTAGTCGA
TTCCTATTGGACAGGGAAAATTTATCTAGGCGGCGAATAGATGGACTTCA
AGAGCACGATCATTCCTATTGCTATAAACAGGCTCGATTTATGTTGGTAC
TTTCTTATATGCCAAA
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