EY659515

Overview
NameEY659515
Unique NameEY659515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659515_ssr362 microsatellite EY659515_ssr362:362..371. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659515 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 6.544e-90
Identity = 166/249 (66.67%), Postives = 205/249 (82.33%), Query Frame = 3
Query:   21 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSDGGFDPDAVGTANILDASVR----PPYYFLSVLNRTADGDEGGXHXLITATVKGGQLYICXGTAGRQMWVR 746
            MA + CFLH  AL+++ AR+S   SSQR+VS  K   +VC+AQ+    E+D S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPK NTDF  Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+S+GGFD +AV TANIL+ +++     PYY+LSVL RTADGDEGG H LITATV GG+LYIC   AG + W +
Sbjct:    1 MAYSACFLHQSALASSTARSSPSSSSQRYVSISK---LVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFK 244          
BLAST of EY659515 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 6.559e-82
Identity = 159/259 (61.39%), Postives = 187/259 (72.20%), Query Frame = 3
Query:   21 MASTQCFLHHHA-------LSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSDGGFDPDAVGTANILDASV----RPPYYFLSVLNRTADGDEGGXHXLITATVKGGQLYICXGTAGRQMWVRXSR 755
            MAST CFLHHHA       LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKTNTDF    GDGFK+ IPSKWNPSKE EFPGQVLRYEDNFD+ SNV V++ PTDKKSI DYGSPE+FLS+VDYLLGKQAY GKT S+GGF+P+AV TANIL+ S        YY + VL RTADGDEGG H LITATV  G+LYIC   AG + W + ++
Sbjct:    1 MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYICKAQAGDKRWFKGAK 252          
BLAST of EY659515 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.472e-81
Identity = 144/201 (71.64%), Postives = 172/201 (85.57%), Query Frame = 3
Query:  156 EDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSDGGFDPDAVGTANILDASVR----PPYYFLSVLNRTADGDEGGXHXLITATVKGGQLYICXGTAGRQMWVR 746
            EDD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF   NGDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+ +GGFD +AV TANIL+ +++     PYY+LSVL RTAD DEGG H LITATV GG+LYIC   AG + W +
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETACEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFK 201          
BLAST of EY659515 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 8.298e-77
Identity = 150/251 (59.76%), Postives = 186/251 (74.10%), Query Frame = 3
Query:   21 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSDGGFDPDAVGTANILDASV----RPPYYFLSVLNRTADGDEGGXHXLITATVKGGQLYICXGTAGRQMWVRXSR 755
            MAST CFLH      + AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K NTDF+ Y+G+GFKL IP+KWNPSKEREFPGQVLRYEDNFD+ SN+SVII PT KK+ITDYGSPEEFLS+V +LLG+Q+Y GKT S+GGF+ DAV TAN+L++S        YY ++VL RTADGDEGG H LITATV  G+LY+C     ++ W + ++
Sbjct:    1 MASTSCFLHQ-----STARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEGGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQRDKR-WFKGAK 245          
BLAST of EY659515 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.872e-53
Identity = 121/251 (48.21%), Postives = 156/251 (62.15%), Query Frame = 3
Query:   21 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSDGGFDPDAVGTANILDASVR-----PPYYFLSVLNRTADGDEGGXHXLITATV-KGGQLYICXGTAGRQMWVRXSR 755
            MA+  C   + A +  P    +S+R       + +V RA         GS VSRR AL    GAAA+ S  SPA+AAYG+SANVFGK    + F+PY GDGF L +P+KWNPSKE +FPG +LRYEDNFD+ +N+ VI   TDKK+I D+GS ++FL  V YLLGKQAYSG+T S+GGF P+ V  A++LD S         YY   +L R+ADGDEGG H LI ATV    +LYI     G + W + ++
Sbjct:    1 MATALC---NKAFAAAPVARPASRR-------SAVVVRAS--------GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLESVSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGGRHQLIGATVGSDNKLYIIKIQIGDKRWFKGAK 232          
BLAST of EY659515 vs. ExPASy Swiss-Prot
Match: PSBP2_ARATH (Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis thaliana GN=PSBP2 PE=5 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.870e-36
Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = 3
Query:  432 IITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSDGGFDPDAVGTANILDASVR----PPYYFLSVLNRTADGDEGGXHXLITATVKGGQLYICXGTAGRQMWVRXSR 755
            +ITPTDKKSITDYGSPE+FLS+V+YLLGKQAY G+T+S+GGFD +AV TANIL+ S +      YY+LSVL RTADGDEGG H LITATV GG+LYIC   AG + W + +R
Sbjct:    1 MITPTDKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGAR 112          
The following BLAST results are available for this feature:
BLAST of EY659515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_SINAL6.544e-9066.67Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS6.559e-8261.39Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU9.472e-8171.64Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT8.298e-7759.76Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE2.872e-5348.21Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_ARATH1.870e-3666.96Putative oxygen-evolving enhancer protein 2-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-A03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659515 ID=EY659515; Name=EY659515; organism=Citrus sinensis; type=EST; length=940bp
CCACGCGTCCGAAAAGAAAAATGGCATCAACTCAATGCTTCTTGCACCAC
CATGCACTCTCTACTACACCAGCAAGAACATCATCATCTCAGCGCCACGT
GTCGAACATCAAGCCCACCCAGATTGTCTGCCGTGCGCAGAAGCAAGCTG
TCCAAGAAGATGACGGCAGCGCCGTCTCCCGCCGTTTGGCTCTGACGGTG
CTCATTGGTGCTGCTGCCGTCGGCTCCAAGGTCTCTCCTGCCGACGCTGC
CTACGGTGAATCAGCCAATGTGTTTGGTAAGCCAAAGACCAACACTGACT
TCTTGCCATACAATGGAGATGGATTCAAGCTGTCGATTCCCTCAAAATGG
AACCCCAGCAAAGAGAGAGAGTTCCCGGGTCAGGTTCTTAGATACGAAGA
CAACTTCGATTCCAACAGCAATGTCTCCGTCATAATCACCCCAACTGACA
AGAAATCCATCACTGACTACGGTTCCCCCGAGGAATTCCTCAGTAAGGTG
GACTACTTGCTGGGAAAACAAGCCTATTCCGGCAAAACTTCGTCTGATGG
TGGTTTCGACCCTGATGCTGTGGGCACAGCTAACATCTTGGATGCTTCAG
TCCGACCACCATACTACTTCTTGTCTGTATTAAACAGAACTGCTGATGGA
GATGAAGGTGGCANGCATNCACTAATTACAGCCACGGTTAAGGGTGGGCA
GCTTTACATCTGCANGGGCACAGCTGGGAGACAGATGTGGGTTAGGGNAA
GCAGATAGATGTGGGAAGCACTGCCAGGTCTTTAGTGGGTGCTGAGACAT
TATCAGAATTTTNATGTAATCCCACTAATGGATGCTGGTTGGTTTGAATA
TCTACTCCCATCTTTCCCAAAGCTTTGGAGTTCTATTGAAGAGTGGTTGG
AAAAAAAAAAAAAAAAAAAAAGGGGCGCCGTCTTAAGATC
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