EY659482

Overview
NameEY659482
Unique NameEY659482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: EFG_LACF3 (Elongation factor G OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.722e-12
Identity = 51/149 (34.23%), Postives = 81/149 (54.36%), Query Frame = 3
Query:   15 TNDKEVDA-HPIR--AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET----VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG 437
            T D   D  HP++  +M F   PV++V+V+ K  +D  K+ +GL++LA+ DP        E+GE +IAG GELHL+I ++ L+ +F   AE+    P VS+RE     V  +      S    ++  +++E  PLEEG     +D  +G
Sbjct:  386 TGDSLTDPDHPLQLESMDFP-EPVIQVSVEPKSKADQDKMDKGLQKLAEEDPTFKAETNPETGETLIAGMGELHLDIIVERLRREF--NAEVTVGKPQVSYREAFTKQVSAQGKFVRQSGGKGQYGDVWIEFTPLEEGAGFEFEDAIVG 531          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: EFG_WIGBR (Elongation factor G OS=Wigglesworthia glossinidia brevipalpis GN=fusA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.166e-11
Identity = 47/100 (47.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   39 HPIRAMKFSV-SPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSC 332
            HPI   K     PV+ VAV+ K  SD  K+   L RLAK DP   V S EESG+ II+G GELHLEI +  +  +F   + + K  P VS+RET+  KSC
Sbjct:  401 HPIILEKMEFPEPVISVAVEPKTKSDQEKMSSALNRLAKEDPSFRVSSDEESGQTIISGMGELHLEILIDRMYREFNVRSNVGK--PQVSYRETI--KSC 496          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: EFG_LACRJ (Elongation factor G OS=Lactobacillus reuteri (strain JCM 1112) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 3
Query:   15 TNDKEVDA-HPIR--AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE----TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG 437
            T D   D  HP++  +M F   PV++V+V+ K  +D  K+ +GL++LA+ DP        E+GE +IAG GELHL+I ++ L+ +F   AE+    P VS+RE    T   +      S    ++  +++E  PL+EG     +D  +G
Sbjct:  386 TGDSLTDPDHPLQLESMDFP-EPVIQVSVEPKSKADQDKMDKGLQKLAEEDPTFKAETNPETGETLIAGMGELHLDIIVERLRREF--HAEVTVGKPQVSYREAFTKTASAQGKFVRQSGGKGQYGDVWIEFTPLKEGEGFEFEDAIVG 531          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: EFG_LACRD (Elongation factor G OS=Lactobacillus reuteri (strain DSM 20016) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 3
Query:   15 TNDKEVDA-HPIR--AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE----TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG 437
            T D   D  HP++  +M F   PV++V+V+ K  +D  K+ +GL++LA+ DP        E+GE +IAG GELHL+I ++ L+ +F   AE+    P VS+RE    T   +      S    ++  +++E  PL+EG     +D  +G
Sbjct:  386 TGDSLTDPDHPLQLESMDFP-EPVIQVSVEPKSKADQDKMDKGLQKLAEEDPTFKAETNPETGETLIAGMGELHLDIIVERLRREF--HAEVTVGKPQVSYREAFTKTASAQGKFVRQSGGKGQYGDVWIEFTPLKEGEGFEFEDAIVG 531          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: EFG_GEMAT (Elongation factor G OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11
Identity = 52/151 (34.44%), Postives = 80/151 (52.98%), Query Frame = 3
Query:    3 DALVTNDKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTVMSKSPNK--HNRLYMEARPLEEGLAEAIDDGRIG 437
            D L T D  +    + AMKF  +PV+ VA++ K  +D  KL   L++LA+ DP   V S  E+G+ IIAG GELHLEI +  +  +F   A +    P V++RET+   +EK     + +S  K  +  + +   P E+G     +D  +G
Sbjct:  400 DTLCTEDNPII---LEAMKFP-NPVIDVAIEPKTKADQDKLAIALQKLAEEDPTFRVRSDAETGQTIIAGMGELHLEIIVDRMMREFKVDANV--GRPQVAYRETIKKRVEKIEGKFVRQSGGKGQYGHVVINMEPSEQGQGYVFEDKVVG 544          
The following BLAST results are available for this feature:
BLAST of EY659482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EFG_LACF39.722e-1234.23Elongation factor G OS=Lactobacillus fermentum (st... [more]
EFG_WIGBR2.166e-1147.00Elongation factor G OS=Wigglesworthia glossinidia ... [more]
EFG_LACRJ6.302e-1133.56Elongation factor G OS=Lactobacillus reuteri (stra... [more]
EFG_LACRD6.302e-1133.56Elongation factor G OS=Lactobacillus reuteri (stra... [more]
EFG_GEMAT6.302e-1134.44Elongation factor G OS=Gemmatimonas aurantiaca (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659482 ID=EY659482; Name=EY659482; organism=Citrus sinensis; type=EST; length=811bp
CGGACGCGTTGGTGACAAACGATAAGGAAGTTGATGCCCATCCTATCCGT
GCTATGAAGTTCTCCGTCTCACCTGTGGTTCGTGTGGCTGTACAGTGCAA
AGTTGCATCTGATCTCCCTAAGCTTGTTGAAGGTCTTAAACGGTTGGCCA
AGTCAGATCCCATGGTTGTCTGTTCCATGGAGGAATCTGGAGAGCATATC
ATTGCCGGTGCAGGAGAACTCCATCTTGAGATCTGTTTGAAGGATTTGCA
GGATGATTTCATGGGTGGTGCTGAGATTATCAAATCTGATCCTGTTGTGT
CCTTCCGTGAAACTGTCCTTGAGAAGTCCTGCCGTACTGTTATGAGCAAG
TCTCCAAACAAACACAATCGTCTCTATATGGAAGCCCGACCATTGGAGGA
AGGTCTTGCCGAGGCAATTGATGATGGTCGTATTGGTCCAAGGGATGATC
CTAAGGTTCGTTCTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGAT
CTTGCCAAGAAAATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACAT
GGTTGTGGATATGTGCAAGGGAGGTCAGTACTTGAATGAAATTAAGGATT
CAGTTGTTGCTGGGGTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAA
GAAAACATGAGGGGCATTGCTTTGAAGTTTGGGATGTGGTCCTTATGCCG
ATGCTATCCACAGAGTGTGGCCAAGTTATCCCACTGCTAAAAGGGTATTT
ATGCTCCAGCTTAAAGCAAACCAAGCTCTTGAGCCTGTCACTTATTGGAA
TCCAGCTCCTG
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