EY659482

Overview
NameEY659482
Unique NameEY659482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: EF2_AERPE (Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.177e-41
Identity = 92/223 (41.26%), Postives = 139/223 (62.33%), Query Frame = 3
Query:    3 DALVTNDKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGGQYLNEIKDSVVAGVQWASKEGALAEENMRGI 668
            + +V+   E +A P  ++++   PVV +AV+     DLPK++E L++L   DP +V  + EE+GE++++G G LHLEI L  L++ F  G E+  S P+V +RETV ++S R    KSPNKHN+LY+   PL E     I +G +    DPK R++IL+++ GWD + A+KIW         N+ VD   G QYL E+KD+++AG + A KEG LA E +RG+
Sbjct:  371 ETVVSLGYEENAAPFESLRYVSEPVVTIAVEPVKIQDLPKMIEALRKLTIEDPNLVVKINEETGEYLLSGMGPLHLEIALTMLREKF--GVEVKASPPIVVYRETVRQQS-RVFEGKSPNKHNKLYISVEPLNEETITLIQNGAVTEDQDPKDRARILADKAGWDYNEARKIWAIDENI---NVFVDKTAGVQYLREVKDTIIAGFRLALKEGPLAAEPVRGV 587          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.632e-41
Identity = 94/211 (44.55%), Postives = 127/211 (60.19%), Query Frame = 3
Query:   36 AHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGGQYLNEIKDSVVAGVQWASKEGALAEENMRGI 668
            AH IR+MKFSVSPVV+VAV  K   DL KL EGL +LA+SDP+ V    + G++ IA AG LHLEICLKDLQD +     II  DP+V++ E +      + M+KS NKHNR+YM   PL++ + + + D +    D  K  +    E+     D  +KIWC+ PE    N++VD  KG   +NEIK+ V  G + A  +G L  E MRG+
Sbjct:  486 AHNIRSMKFSVSPVVKVAVSAKRPEDLGKLQEGLNKLAQSDPLCVVERNDKGQNTIACAGSLHLEICLKDLQDQY-AKVPIIADDPLVTYFEGISCAVSDSKMTKSANKHNRIYMTVEPLDQNIVDNLKDVK---SDQAKTMATNFREKLDIRDDWIRKIWCYAPEVNPLNLLVDGTKGISIINEIKEHVNTGFRAAVNDGPLIGEVMRGL 692          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.947e-40
Identity = 86/210 (40.95%), Postives = 132/210 (62.86%), Query Frame = 3
Query:   42 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGGQYLNEIKDSVVAGVQWASKEGALAEENMRGI 668
            P   ++    PVV VA++ K   DLPKL++ L +L+  DP +V  + EE+GE++++G G LH+EI L  L++++  G ++I S P++ +RE++ +KS R    KSPNKHN+LY+   PL+E     I DG I    DPK R+K+L EE GW  D A++IW         N+ VD+  G Q+L E+KD+++ G + A +EG LA E +RG+
Sbjct:  384 PFEKLRMISEPVVTVAIEPKNPRDLPKLIDALHKLSIEDPSLVVRINEETGEYLLSGMGPLHIEIALTFLKENY--GLDVIASQPIIVYRESIRDKS-RVFEGKSPNKHNKLYISVEPLDEKTISLIHDGIITEDMDPKQRAKVLREEAGWPTDQARRIWAIDENI---NVFVDLTTGVQHLREVKDTIIQGFRLAMREGPLAMEPVRGV 587          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.461e-40
Identity = 90/223 (40.36%), Postives = 137/223 (61.43%), Query Frame = 3
Query:    3 DALVTNDKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDP-MVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGGQYLNEIKDSVVAGVQWASKEGALAEENMRGI 668
            + LV  + +  A P   + +   PVV VA++ K   DLPKL+E L+ L+  DP + V   +E+GE++++G G LH+EI L  L++ +  G E+  S PV+++RETV  K    V  KSPNKHN+LY+   PLE+ + E I  G I    DP+ R+K+L ++  WD D A++IW    E    N+ +D   G Q+L E+KD+++AG + A KEG LA+E +RG+
Sbjct:  374 ETLVDINYKDQAAPFEQLHYVSEPVVTVAIEPKNPRDLPKLIEALRTLSIEDPNLKVTINQETGEYLLSGMGMLHIEIALTQLKEVY--GLEVKVSPPVITYRETV-RKPGEKVEGKSPNKHNKLYITVEPLEKEVIEMIQKGEITDDQDPRERAKVLRDKVNWDADTARRIWAVDEENF--NIFIDKTVGVQHLREVKDTILAGWRLAMKEGPLAKEPVRGV 591          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.591e-38
Identity = 83/219 (37.90%), Postives = 135/219 (61.64%), Query Frame = 3
Query:   33 DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGGQ----YLNEIKDSVVAGVQWASKEGALAEENMRGIALK 677
            +A   R +KF+ + V+++AV+    S+LPK+++GL+++ KS P +   +EESGEH+I G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+  GPN++VD     +     L  +KDS+V G QW ++EG L +E +R +  K
Sbjct:  572 EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFK 789          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.591e-38
Identity = 83/219 (37.90%), Postives = 135/219 (61.64%), Query Frame = 3
Query:   33 DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGGQ----YLNEIKDSVVAGVQWASKEGALAEENMRGIALK 677
            +A   R +KF+ + V+++AV+    S+LPK+++GL+++ KS P +   +EESGEH+I G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+  GPN++VD     +     L  +KDS+V G QW ++EG L +E +R +  K
Sbjct:  573 EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFK 790          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.591e-38
Identity = 83/219 (37.90%), Postives = 135/219 (61.64%), Query Frame = 3
Query:   33 DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGGQ----YLNEIKDSVVAGVQWASKEGALAEENMRGIALK 677
            +A   R +KF+ + V+++AV+    S+LPK+++GL+++ KS P +   +EESGEH+I G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+  GPN++VD     +     L  +KDS+V G QW ++EG L +E +R +  K
Sbjct:  573 EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFK 790          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.591e-38
Identity = 83/219 (37.90%), Postives = 135/219 (61.64%), Query Frame = 3
Query:   33 DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGGQ----YLNEIKDSVVAGVQWASKEGALAEENMRGIALK 677
            +A   R +KF+ + V+++AV+    S+LPK+++GL+++ KS P +   +EESGEH+I G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+  GPN++VD     +     L  +KDS+V G QW ++EG L +E +R +  K
Sbjct:  573 EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFK 790          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.714e-38
Identity = 83/219 (37.90%), Postives = 134/219 (61.19%), Query Frame = 3
Query:   33 DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGGQ----YLNEIKDSVVAGVQWASKEGALAEENMRGIALK 677
            +A   R +KF+ + V+++AV+    S+LPK+++GL+++ KS P +   +EESGEH+I G GEL+L+  + DL   +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+  GPN++VD     +     L  +KDS+V G QW ++EG L +E +R +  K
Sbjct:  573 EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLPKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFK 790          
BLAST of EY659482 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.140e-36
Identity = 89/213 (41.78%), Postives = 124/213 (58.22%), Query Frame = 3
Query:   33 DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGGQYLNEIKDSVVAGVQWASKEGALAEENMRGI 668
            D  P   M++   PVV VA++ K  ++L KLVE LK L   DP +   ++ E+G+ +++G G LHLEI    L++      E   S P++ FRETV E+S +    KSPNKHNRLY    PL+E   E I    I    DP+ R+KIL E+ GWD D A+ IW         N++VD   G QYL EI+D +V G +WA++ G LA+E +RG+
Sbjct:  383 DIPPFEKMRYIAEPVVTVAIEPKNPAELAKLVEALKDLVIEDPTLDLKIDQETGQILLSGVGTLHLEIATWLLKE--RSKTEFTVSPPLIRFRETVRERS-QVWEGKSPNKHNRLYFYVEPLDETTIELIATKEITEDQDPRERAKILREKAGWDTDEARGIWAIDDRYF--NVIVDKTSGIQYLREIRDYIVQGFRWATEAGPLAQEPIRGV 590          
The following BLAST results are available for this feature:
BLAST of EY659482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EF2_AERPE1.177e-4141.26Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE... [more]
EF2_ENCCU7.632e-4144.55Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]
EF2_STAMF4.947e-4040.95Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_IGNH46.461e-4040.36Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]
U5S1_MOUSE1.591e-3837.90116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN1.591e-3837.90116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK1.591e-3837.90116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN1.591e-3837.90116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB2.714e-3837.90116 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_PYRIL1.140e-3641.78Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659482 ID=EY659482; Name=EY659482; organism=Citrus sinensis; type=EST; length=811bp
CGGACGCGTTGGTGACAAACGATAAGGAAGTTGATGCCCATCCTATCCGT
GCTATGAAGTTCTCCGTCTCACCTGTGGTTCGTGTGGCTGTACAGTGCAA
AGTTGCATCTGATCTCCCTAAGCTTGTTGAAGGTCTTAAACGGTTGGCCA
AGTCAGATCCCATGGTTGTCTGTTCCATGGAGGAATCTGGAGAGCATATC
ATTGCCGGTGCAGGAGAACTCCATCTTGAGATCTGTTTGAAGGATTTGCA
GGATGATTTCATGGGTGGTGCTGAGATTATCAAATCTGATCCTGTTGTGT
CCTTCCGTGAAACTGTCCTTGAGAAGTCCTGCCGTACTGTTATGAGCAAG
TCTCCAAACAAACACAATCGTCTCTATATGGAAGCCCGACCATTGGAGGA
AGGTCTTGCCGAGGCAATTGATGATGGTCGTATTGGTCCAAGGGATGATC
CTAAGGTTCGTTCTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGAT
CTTGCCAAGAAAATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACAT
GGTTGTGGATATGTGCAAGGGAGGTCAGTACTTGAATGAAATTAAGGATT
CAGTTGTTGCTGGGGTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAA
GAAAACATGAGGGGCATTGCTTTGAAGTTTGGGATGTGGTCCTTATGCCG
ATGCTATCCACAGAGTGTGGCCAAGTTATCCCACTGCTAAAAGGGTATTT
ATGCTCCAGCTTAAAGCAAACCAAGCTCTTGAGCCTGTCACTTATTGGAA
TCCAGCTCCTG
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