EY659475

Overview
NameEY659475
Unique NameEY659475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.537e-50
Identity = 89/122 (72.95%), Postives = 105/122 (86.07%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMA CL+YRGDVV +DV  AVA +K+K+T+Q VDWCPTGFK GI YQPPT + G +LA   RAVCM+SN+T++AE + RID KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  312 KYMATCLLYRGDVVTRDVQNAVAQVKSKKTVQLVDWCPTGFKIGICYQPPTAIKGSELASASRAVCMLSNTTAIAEAWRRIDRKFDLMYSKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.619e-50
Identity = 90/122 (73.77%), Postives = 102/122 (83.61%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMA CL+YRGDVV +DV  AV  +K K+T+Q VDWCPTGFK GI Y+PPT  P   LA V RAVCM+SN+TS+AE + RID KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  312 KYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.879e-50
Identity = 88/122 (72.13%), Postives = 103/122 (84.43%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMA CL+YRGDVV +DV  AVA +K K+T+Q VDWCPTGFK GI Y+PPT  P   L+ V RAVCM+SN+T++A+ + RID KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  313 KYMATCLLYRGDVVTRDVQTAVAQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLSSVSRAVCMLSNTTAIADAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 434          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.879e-50
Identity = 88/122 (72.13%), Postives = 105/122 (86.07%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMA CL+YRGDVV +DV  AV  +K K+T+Q VDWCPTGFK GI Y+PP+V+P  +LA V RAVCM+SN+T++A+ + RID KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  312 KYMANCLLYRGDVVTRDVQRAVEQVKNKKTVQMVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.146e-47
Identity = 85/122 (69.67%), Postives = 102/122 (83.61%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMA  L+YRGD VP+D   A+A++K K +   V+WCPTGFK GINYQ P  VPG +LA V R+V M+SN+T+++E +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  313 KYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 434          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.372e-46
Identity = 83/122 (68.03%), Postives = 103/122 (84.43%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCL++RGDV PK+ N A A +K KRT QFV+WCPTGFK GIN + PTV+ G  +A+V RAVC +SN+T+++E + R+++KFDLM++KRAFVHWYVGEGMEEGEFSEAREDLA LE DY
Sbjct:  307 KYMACCLLFRGDVNPKEANNATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVHWYVGEGMEEGEFSEAREDLAMLEDDY 428          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.372e-46
Identity = 84/105 (80.00%), Postives = 94/105 (89.52%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 317
            KYMA CL+YRGDVV KDVNAAVA ++TKRTIQFVDWCPTGFK G+ YQPP  VP GDLAKV RAVCM+SN+TS+AE + R+DHKFDLMY+KRAFVHWYVGEGMEE
Sbjct:  108 KYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGFKLGVCYQPPQHVPHGDLAKVDRAVCMLSNTTSIAEAWPRLDHKFDLMYSKRAFVHWYVGEGMEE 212          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.098e-46
Identity = 82/124 (66.13%), Postives = 104/124 (83.87%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTK--RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCLMYRGD+VPK+   AV  I+++  R + FVDW PTGFKCGIN Q P      ++A+V+++VCM+SN+T++++VFSRI+HKFDLM+ KRAFVHWYVGEGMEEGEF+EAR+DL ALEKDY
Sbjct:  318 KYMACCLMYRGDIVPKEAQKAVQNIRSEKSRNVSFVDWSPTGFKCGINNQAPVSTKDSEMAEVKKSVCMLSNTTAISQVFSRINHKFDLMFVKRAFVHWYVGEGMEEGEFAEARDDLLALEKDY 441          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 5.285e-46
Identity = 87/127 (68.50%), Postives = 103/127 (81.10%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP-----GGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMA  L+YRGDVVP+D +AAVA +K K +   V+WCPTGFK GIN+Q P  VP      G LA V R+V M+SN+T++AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA+LEKDY
Sbjct:  312 KYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASLEKDY 438          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.143e-43
Identity = 80/108 (74.07%), Postives = 95/108 (87.96%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 326
            KYMA CL+YRGDVVPKDV+A  AT+KTKRT+QFVD  PTGFK GI YQPPT+VP GDLAKV RA CM+SN+T+++E ++ + HKFDL+Y+KRAFVHWYVGEGMEEGEF
Sbjct:  312 KYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRA-CMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418          
The following BLAST results are available for this feature:
BLAST of EY659475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBA_CANAL3.537e-5072.95Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBA1_YEAST4.619e-5073.77Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA_ASHGO7.879e-5072.13Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBA3_YEAST7.879e-5072.13Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA2_EMENI2.146e-4769.67Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA_ENCCU2.372e-4668.03Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBAA_PNECA2.372e-4680.00Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBA_DICDI3.098e-4666.13Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA1_NEUCR5.285e-4668.50Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA_AJECA7.143e-4374.07Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659475 ID=EY659475; Name=EY659475; organism=Citrus sinensis; type=EST; length=644bp
GCAAGTATATGGCCTGCTGTTTGATGTATCGCGGTGATGTTGTGCCTAAG
GATGTGAATGCAGCTGTGGCCACCATCAAGACCAAGCGCACAATTCAGTT
TGTTGACTGGTGCCCTACTGGATTCAAGTGTGGTATCAACTATCAGCCAC
CAACTGTGGTCCCTGGCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCTGC
ATGATTTCCAACTCCACCAGCGTTGCTGAAGTGTTTTCTCGCATTGATCA
CAAGTTTGACCTAATGTATGCCAAGCGTGCTTTTGTGCACTGGTATGTTG
GTGAGGGAATGGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTTGCT
GCCCTGGAGAAGGATTATGAAGAGGTTGGTGCAGAATCTGCTGAGGGGGA
GGATGGCGACGAAGGAGATGAATATTAATTGTGTTTGTGCACTGATAAGG
GATGTGCCATCTTTCCTTTCTTATGTTGTTCTGGATGATGTTGTCCAATA
ATGTTGGGGGTGTTCTAAGTGCCTTTGCACTGACATTNTAATTGATTTCT
TAAGACTTGGTTGATTATGGTATCGGTAACCGTGGCCCATGGCTCTTGCT
TATAAAATTGCTTTTTNGAANAAAAAAAANNAAANAAAAAAAAA
back to top