EY659475 | Citrus Genome Database

Overview


Name	EY659475
Unique Name	EY659475
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	644

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB5_HUMAN (Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 41/122 (33.61%), Postives = 69/122 (56.56%), Query Frame = 3

Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ AV  I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

[Close]

BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB5_CRIGR (Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 41/122 (33.61%), Postives = 69/122 (56.56%), Query Frame = 3

Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ AV  I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

[Close]

BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB5_BOVIN (Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 41/122 (33.61%), Postives = 69/122 (56.56%), Query Frame = 3

Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ AV  I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

[Close]

BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 3

Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

[Close]

BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 3

Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

[Close]

BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 3

Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPI--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422

[Close]

BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 3

Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

[Close]

BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 3

Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

[Close]

BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB1_PARTE (Tubulin beta chain OS=Paramecium tetraurelia GN=bPT2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 40/122 (32.79%), Postives = 69/122 (56.56%), Query Frame = 3

Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  I   PP          ++ AV  + NST++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDIPPK--------GLKMAVTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

[Close]

BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 3

Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

The following BLAST results are available for this feature:

BLAST of EY659475 vs. ExPASy Swiss-Prot

BLAST of EY659475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376


Match Name	E-value	Identity	Description
TBB5_HUMAN	6.732e-17	33.61	Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV...	[more]
TBB5_CRIGR	6.732e-17	33.61	Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB...	[more]
TBB5_BOVIN	6.732e-17	33.61	Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 S...	[more]
TBB4_ORYSJ	6.732e-17	33.61	Tubulin beta-4 chain OS=Oryza sativa subsp. japoni...	[more]
TBB4_ELEIN	6.732e-17	33.61	Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P...	[more]
TBB3_ORYSJ	6.732e-17	33.61	Tubulin beta-3 chain OS=Oryza sativa subsp. japoni...	[more]
TBB2_ELEIN	6.732e-17	33.61	Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 P...	[more]
TBB1_WHEAT	6.732e-17	33.61	Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1...	[more]
TBB1_PARTE	6.732e-17	32.79	Tubulin beta chain OS=Paramecium tetraurelia GN=bP...	[more]
TBB1_ORYSJ	6.732e-17	33.61	Tubulin beta-1 chain OS=Oryza sativa subsp. japoni...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-009-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY659475 ID=EY659475; Name=EY659475; organism=Citrus sinensis; type=EST; length=644bp
GCAAGTATATGGCCTGCTGTTTGATGTATCGCGGTGATGTTGTGCCTAAG
GATGTGAATGCAGCTGTGGCCACCATCAAGACCAAGCGCACAATTCAGTT
TGTTGACTGGTGCCCTACTGGATTCAAGTGTGGTATCAACTATCAGCCAC
CAACTGTGGTCCCTGGCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCTGC
ATGATTTCCAACTCCACCAGCGTTGCTGAAGTGTTTTCTCGCATTGATCA
CAAGTTTGACCTAATGTATGCCAAGCGTGCTTTTGTGCACTGGTATGTTG
GTGAGGGAATGGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTTGCT
GCCCTGGAGAAGGATTATGAAGAGGTTGGTGCAGAATCTGCTGAGGGGGA
GGATGGCGACGAAGGAGATGAATATTAATTGTGTTTGTGCACTGATAAGG
GATGTGCCATCTTTCCTTTCTTATGTTGTTCTGGATGATGTTGTCCAATA
ATGTTGGGGGTGTTCTAAGTGCCTTTGCACTGACATTNTAATTGATTTCT
TAAGACTTGGTTGATTATGGTATCGGTAACCGTGGCCCATGGCTCTTGCT
TATAAAATTGCTTTTTNGAANAAAAAAAANNAAANAAAAAAAAA