EY659475

Overview
NameEY659475
Unique NameEY659475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.500e-16
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +      + P G    +  A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVC----DIAPRG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.500e-16
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +      + P G    +  A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  300 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVC----DIAPRG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 413          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.500e-16
Identity = 38/122 (31.15%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +++    M+RG +  K+V+  +  ++TK +  FV+W P   K  +   PP          ++ +   + NST++ E+F R+  +F  MY ++AF+HWY GEGM++ EF+EA  ++  L  +Y
Sbjct:  309 RFLTASCMFRGRMSTKEVDEQMLNVQTKNSSYFVEWIPNNIKASVCDIPPK--------GLKMSSTFVGNSTAIQEMFKRVGEQFTAMYKRKAFLHWYTGEGMDDMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB2_ERYPI (Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.500e-16
Identity = 39/122 (31.97%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTCSAIFRGKVSMKEVEDQMRNVQNKNSAYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVHEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB2_ANEPH (Tubulin beta-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.500e-16
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NSTS+ E+F R+  +F  M+  +AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  277 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPV--------GLKMACTFIGNSTSIQEMFRRVRDQFTAMFRXKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 390          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_PESMI (Tubulin beta chain OS=Pestalotiopsis microspora GN=TUBB PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 39/122 (31.97%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_PENDI (Tubulin beta chain OS=Penicillium digitatum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 39/122 (31.97%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+ C  ++RG +  K+V   +  I+ K    FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTCSALFRGKISMKEVEDQMRNIQNKNQSYFVEWIPNNVQTALCSVPPR--------GLKMSSTFVGNSTSIQELFKRVGDQFAAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 39/122 (31.97%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 40/122 (32.79%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NST++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPK--------GLKLASTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 39/122 (31.97%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPI--------GLKMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422          
The following BLAST results are available for this feature:
BLAST of EY659475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBB6_ARATH1.500e-1633.61Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_PEA1.500e-1633.61Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB3_OOMCK1.500e-1631.15Tubulin beta-3 chain OS=Oomycete-like sp. (strain ... [more]
TBB2_ERYPI1.500e-1631.97Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2... [more]
TBB2_ANEPH1.500e-1633.61Tubulin beta-2 chain (Fragment) OS=Anemia phylliti... [more]
TBB_PESMI1.959e-1631.97Tubulin beta chain OS=Pestalotiopsis microspora GN... [more]
TBB_PENDI1.959e-1631.97Tubulin beta chain OS=Penicillium digitatum GN=TUB... [more]
TBB_NEUCR1.959e-1631.97Tubulin beta chain OS=Neurospora crassa GN=tub-2 P... [more]
TBB_EUPCR1.959e-1632.79Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB7_MAIZE1.959e-1631.97Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659475 ID=EY659475; Name=EY659475; organism=Citrus sinensis; type=EST; length=644bp
GCAAGTATATGGCCTGCTGTTTGATGTATCGCGGTGATGTTGTGCCTAAG
GATGTGAATGCAGCTGTGGCCACCATCAAGACCAAGCGCACAATTCAGTT
TGTTGACTGGTGCCCTACTGGATTCAAGTGTGGTATCAACTATCAGCCAC
CAACTGTGGTCCCTGGCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCTGC
ATGATTTCCAACTCCACCAGCGTTGCTGAAGTGTTTTCTCGCATTGATCA
CAAGTTTGACCTAATGTATGCCAAGCGTGCTTTTGTGCACTGGTATGTTG
GTGAGGGAATGGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTTGCT
GCCCTGGAGAAGGATTATGAAGAGGTTGGTGCAGAATCTGCTGAGGGGGA
GGATGGCGACGAAGGAGATGAATATTAATTGTGTTTGTGCACTGATAAGG
GATGTGCCATCTTTCCTTTCTTATGTTGTTCTGGATGATGTTGTCCAATA
ATGTTGGGGGTGTTCTAAGTGCCTTTGCACTGACATTNTAATTGATTTCT
TAAGACTTGGTTGATTATGGTATCGGTAACCGTGGCCCATGGCTCTTGCT
TATAAAATTGCTTTTTNGAANAAAAAAAANNAAANAAAAAAAAA
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